UHGV-1398440

Genome information

Genome length 18,186 bps

CDS count 39

Completeness 53.21% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-1398440
vOTU ID	vOTU-034311
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0129901
BioSample	SAMEA3882547
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.39
Jumbo phage	No

Genome content
Genome length	18,186 bps
GC content	50.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	93.80%
Average CDS length	441.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1398440_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1398440_2	PHROG	phrog_435	endolysin	lysis
UHGV-1398440_2	UniRef90	UniRef90_A0A2V2GRI9	MurNAc-LAA domain-containing protein	NA
UHGV-1398440_2	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1398440_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1398440_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1398440_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1398440_3	eggNOG-mapper	1347392.CCEZ01000017_gene1158	NA	NA
UHGV-1398440_4	PHROG	phrog_1863	NA	unknown function
UHGV-1398440_4	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-1398440_5	PHROG	phrog_2310	NA	unknown function
UHGV-1398440_5	eggNOG-mapper	1415774.U728_3409	NA	NA
UHGV-1398440_8	PHROG	phrog_29409	NA	unknown function
UHGV-1398440_8	UniRef90	UniRef90_A0A2V2GQ35	Isoaspartyl peptidase	NA
UHGV-1398440_9	PHROG	phrog_37900	NA	unknown function
UHGV-1398440_9	UniRef90	UniRef90_A0A2V2GLK0	NA	NA
UHGV-1398440_9	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-1398440_9	Pfam	PF19789	NA	DUF6273
UHGV-1398440_9	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1398440_9	Structural annotation	PF19789, PF03785	NA	NA
UHGV-1398440_10	PHROG	phrog_5811	NA	unknown function
UHGV-1398440_10	eggNOG-mapper	665956.HMPREF1032_00105	NA	NA
UHGV-1398440_10	Structural annotation	PF20747, TIGR03353	NA	NA
UHGV-1398440_11	PHROG	phrog_7064	tail protein	tail
UHGV-1398440_11	eggNOG-mapper	665956.HMPREF1032_00106	NA	NA
UHGV-1398440_11	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-1398440_12	PHROG	phrog_20385	minor tail protein	tail
UHGV-1398440_12	UniRef90	UniRef90_UPI001C013719	phage baseplate protein	NA
UHGV-1398440_12	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-1398440_13	PHROG	phrog_22543	NA	unknown function
UHGV-1398440_13	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-1398440_15	Structural annotation	PF18895	NA	NA
UHGV-1398440_17	Structural annotation	TIGR04381	NA	NA
UHGV-1398440_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1398440_19	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1398440_19	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1398440_19	eggNOG-mapper	477974.Daud_0813	NA	NA
UHGV-1398440_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1398440_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1398440_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1398440_20	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-1398440_20	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1398440_20	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1398440_20	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1398440_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1398440_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1398440_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1398440_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1398440_21	UniRef90	UniRef90_K1R461	DNA-cytosine methyltransferase	NA
UHGV-1398440_21	eggNOG-mapper	755731.Clo1100_3519	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1398440_21	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1398440_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1398440_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1398440_22	PHROG	phrog_9804	NA	unknown function
UHGV-1398440_22	UniRef90	UniRef90_UPI001E312ACC	replicative helicase loader/inhibitor	NA
UHGV-1398440_22	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-1398440_22	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1398440_22	Structural annotation	PF11417	NA	NA
UHGV-1398440_23	PHROG	phrog_16304	NA	unknown function
UHGV-1398440_23	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-1398440_23	eggNOG-mapper	290402.Cbei_3733	DnaD domain protein	NA
UHGV-1398440_23	Pfam	PF19808	NA	DUF6291
UHGV-1398440_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1398440_23	Structural annotation	PF19808	NA	NA
UHGV-1398440_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1398440_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1398440_24	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-1398440_24	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-1398440_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1398440_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1398440_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1398440_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1398440_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1398440_25	PHROG	phrog_7566	NA	unknown function
UHGV-1398440_25	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-1398440_26	PHROG	phrog_1389	NA	unknown function
UHGV-1398440_26	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-1398440_26	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-1398440_27	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1398440_27	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-1398440_27	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-1398440_27	Pfam	PF06378	NA	DUF1071
UHGV-1398440_27	Structural annotation	PF06378, COG4712	NA	NA
UHGV-1398440_29	PHROG	phrog_4433	NA	unknown function
UHGV-1398440_29	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-1398440_29	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1398440_29	Structural annotation	NF007410	NA	NA
UHGV-1398440_32	Structural annotation	NF041588	NA	NA
UHGV-1398440_33	UniRef90	UniRef90_UPI001E431871	helix-turn-helix transcriptional regulator	NA
UHGV-1398440_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1398440_33	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1398440_35	UniRef90	UniRef90_UPI001967CDDD	helix-turn-helix transcriptional regulator	NA
UHGV-1398440_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1398440_35	Structural annotation	PF13560, NF040507, COG1396	NA	NA
UHGV-1398440_36	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1398440_36	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-1398440_36	eggNOG-mapper	1378168.N510_01712	NA	NA
UHGV-1398440_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1398440_36	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-1398440_37	UniRef90	UniRef90_UPI001E2EC555	helix-turn-helix domain-containing protein	NA
UHGV-1398440_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1398440_37	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-1398440_38	PHROG	phrog_26910	NA	unknown function
UHGV-1398440_38	eggNOG-mapper	476272.RUMHYD_01979	NA	NA
UHGV-1398440_39	KOfam	K14059	int; integrase	NA
UHGV-1398440_39	PHROG	phrog_1	integrase	integration and excision
UHGV-1398440_39	UniRef90	UniRef90_UPI001E298856	site-specific integrase	NA
UHGV-1398440_39	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-1398440_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1398440_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1398440_39	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA