UHGV-1398727

Genome information

vOTU vOTU-019457

Genome length 29,426 bps

CDS count 40

Completeness 72.88% (medium-quality)

geNomad score 0.9706

Prediction confidence Confident

Genome information
Genome ID	UHGV-1398727
vOTU ID	vOTU-019457
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0208232
BioSample	NA
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9706
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.42
Jumbo phage	No

Genome content
Genome length	29,426 bps
GC content	37.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	89.30%
Average CDS length	658.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1398727_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1398727_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1398727_1	UniRef90	UniRef90_R2XV98	HTH cro/C1-type domain-containing protein	NA
UHGV-1398727_1	eggNOG-mapper	1158614.I592_03377	Helix-turn-helix XRE-family like proteins	NA
UHGV-1398727_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1398727_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1398727_1	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1398727_2	PHROG	phrog_87	metallo-protease	other
UHGV-1398727_2	UniRef90	UniRef90_R2VLZ6	Peptidase_M78 domain-containing protein	NA
UHGV-1398727_2	eggNOG-mapper	1158614.I592_03376	IrrE N-terminal-like domain	NA
UHGV-1398727_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1398727_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1398727_2	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-1398727_3	PHROG	phrog_5319	outer membrane protein	other
UHGV-1398727_3	UniRef90	UniRef90_UPI0011AFA0FE	transcriptional regulator	NA
UHGV-1398727_3	eggNOG-mapper	1158601.I585_00731	NA	NA
UHGV-1398727_4	eggNOG-mapper	1158614.I592_03371	NA	NA
UHGV-1398727_5	KOfam	K14059	int; integrase	NA
UHGV-1398727_5	PHROG	phrog_1	integrase	integration and excision
UHGV-1398727_5	UniRef90	UniRef90_UPI00159D0E32	site-specific integrase	NA
UHGV-1398727_5	eggNOG-mapper	1158601.I585_04156	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1398727_5	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1398727_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1398727_5	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1398727_5	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1398727_6	eggNOG-mapper	1140002.I570_03989	NA	NA
UHGV-1398727_6	Structural annotation	PF01336, MF_01959, NF009729, COG2332	NA	NA
UHGV-1398727_7	PHROG	phrog_13463	endolysin	lysis
UHGV-1398727_7	UniRef90	UniRef90_R2RGP4	NlpC/P60 domain-containing protein	NA
UHGV-1398727_7	eggNOG-mapper	1158601.I585_04175	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1398727_7	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1398727_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1398727_7	Structural annotation	PF05382, TIGR02219, COG0791	NA	NA
UHGV-1398727_8	PHROG	phrog_32897	NA	unknown function
UHGV-1398727_8	eggNOG-mapper	1158602.I590_01701	NA	NA
UHGV-1398727_9	PHROG	phrog_10091	holin	lysis
UHGV-1398727_9	UniRef90	UniRef90_UPI0008C46B2C	phage holin	NA
UHGV-1398727_9	eggNOG-mapper	411465.PEPMIC_00750	Bacteriophage holin	NA
UHGV-1398727_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1398727_9	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1398727_9	COG	COG5546	NA	NA
UHGV-1398727_9	Structural annotation	COG5546	NA	NA
UHGV-1398727_10	PHROG	phrog_1893	NA	unknown function
UHGV-1398727_10	UniRef90	UniRef90_T2F7N5	Phage-related protein	NA
UHGV-1398727_10	eggNOG-mapper	1158601.I585_01144	NA	NA
UHGV-1398727_11	PHROG	phrog_134	NA	unknown function
UHGV-1398727_11	UniRef90	UniRef90_A0A437UPJ4	XkdX family protein	NA
UHGV-1398727_11	eggNOG-mapper	565664.EFXG_01755	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1398727_11	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1398727_11	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1398727_12	PHROG	phrog_1536	NA	unknown function
UHGV-1398727_12	eggNOG-mapper	1300150.EMQU_0809	NA	NA
UHGV-1398727_13	PHROG	phrog_10054	NA	unknown function
UHGV-1398727_13	UniRef90	UniRef90_A0A7U6L4B6	BppU_N domain-containing protein	NA
UHGV-1398727_13	eggNOG-mapper	1158601.I585_00682	NA	NA
UHGV-1398727_13	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1398727_13	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-1398727_13	Structural annotation	PF10651, PF14741	NA	NA
UHGV-1398727_14	PHROG	phrog_4577	tail protein	tail
UHGV-1398727_14	eggNOG-mapper	1158614.I592_00634	NA	NA
UHGV-1398727_14	Structural annotation	NF041901	NA	NA
UHGV-1398727_15	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-1398727_15	UniRef90	UniRef90_UPI00090032DF	phage tail protein	NA
UHGV-1398727_15	eggNOG-mapper	1158614.I592_01132	Prophage endopeptidase tail	NA
UHGV-1398727_15	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1398727_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1398727_15	COG	COG4926	Phage-related protein	NA
UHGV-1398727_15	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1398727_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1398727_16	UniRef90	UniRef90_A0A437UPA9	Phage tail family protein	NA
UHGV-1398727_16	eggNOG-mapper	1158601.I585_00685	Phage tail protein	NA
UHGV-1398727_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1398727_16	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1398727_17	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-1398727_17	UniRef90	UniRef90_A0A345FQK3	Capsid protein	NA
UHGV-1398727_17	eggNOG-mapper	1158601.I585_00686	NlpC/P60 family	NA
UHGV-1398727_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1398727_17	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1398727_17	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1398727_17	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1398727_17	Structural annotation	PF20155, PF18013, TIGR01760, COG3941, COG3953	NA	NA
UHGV-1398727_18	PHROG	phrog_706	NA	unknown function
UHGV-1398727_18	UniRef90	UniRef90_UPI001C10E1BA	Gp15 family bacteriophage protein	NA
UHGV-1398727_18	eggNOG-mapper	1140001.I571_02118	Bacteriophage Gp15 protein	NA
UHGV-1398727_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1398727_18	Structural annotation	PF06854	NA	NA
UHGV-1398727_19	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-1398727_19	UniRef90	UniRef90_C9AN01	Predicted protein	NA
UHGV-1398727_19	eggNOG-mapper	1158601.I585_00688	NA	NA
UHGV-1398727_19	Structural annotation	PF10666	NA	NA
UHGV-1398727_20	PHROG	phrog_820	major tail protein	tail
UHGV-1398727_20	UniRef90	UniRef90_UPI001C11E232	capsid protein	NA
UHGV-1398727_20	eggNOG-mapper	1140001.I571_02115	domain, Protein	NA
UHGV-1398727_20	COG	COG5492	NA	NA
UHGV-1398727_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1398727_21	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1398727_21	UniRef90	UniRef90_UPI0018A2E21A	capsid protein	NA
UHGV-1398727_21	eggNOG-mapper	1140001.I571_02114	Minor capsid protein from bacteriophage	NA
UHGV-1398727_21	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1398727_21	Structural annotation	PF12691	NA	NA
UHGV-1398727_22	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1398727_22	UniRef90	UniRef90_A0A345FQJ7	Capsid protein	NA
UHGV-1398727_22	eggNOG-mapper	1140001.I571_02113	Minor capsid protein	NA
UHGV-1398727_22	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1398727_22	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1398727_23	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1398727_23	UniRef90	UniRef90_UPI00090013CF	putative minor capsid protein	NA
UHGV-1398727_23	eggNOG-mapper	1158601.I585_00693	Minor capsid protein	NA
UHGV-1398727_23	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1398727_23	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1398727_24	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1398727_24	eggNOG-mapper	1158614.I592_01122	NA	NA
UHGV-1398727_25	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1398727_25	UniRef90	UniRef90_UPI001F0C7B72	Ig-like domain-containing protein	NA
UHGV-1398727_25	eggNOG-mapper	1140001.I571_01157	domain, Protein	NA
UHGV-1398727_25	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1398727_25	COG	COG5492	NA	NA
UHGV-1398727_25	Structural annotation	PF02368, TIGR04225	NA	NA
UHGV-1398727_26	PHROG	phrog_422	major head protein	head and packaging
UHGV-1398727_26	UniRef90	UniRef90_A0A829A4D2	BIG2 domain-containing protein	NA
UHGV-1398727_26	eggNOG-mapper	1158614.I592_01121	NA	NA
UHGV-1398727_26	Structural annotation	PF20911	NA	NA
UHGV-1398727_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1398727_27	UniRef90	UniRef90_S4E2G7	Phage minor structural protein GP20	NA
UHGV-1398727_27	eggNOG-mapper	1158601.I585_00696	Phage minor structural protein GP20	NA
UHGV-1398727_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1398727_27	Structural annotation	PF06810	NA	NA
UHGV-1398727_28	Structural annotation	PF02100	NA	NA
UHGV-1398727_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1398727_29	UniRef90	UniRef90_S4EI20	Phage minor capsid protein 2	NA
UHGV-1398727_29	eggNOG-mapper	1140001.I571_02107	Phage minor capsid protein 2	NA
UHGV-1398727_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1398727_29	Structural annotation	PF06152	NA	NA
UHGV-1398727_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-1398727_30	UniRef90	UniRef90_A0A3F3LAK1	Phage portal protein	NA
UHGV-1398727_30	eggNOG-mapper	1140001.I571_02106	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1398727_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1398727_30	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1398727_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1398727_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1398727_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1398727_31	UniRef90	UniRef90_A0A345FQI9	PBSX family phage terminase large subunit	NA
UHGV-1398727_31	eggNOG-mapper	1140001.I571_02105	Terminase RNAseH like domain	NA
UHGV-1398727_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1398727_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1398727_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1398727_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1398727_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1398727_32	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1398727_32	UniRef90	UniRef90_UPI00196B2C2C	phage terminase small subunit	NA
UHGV-1398727_32	eggNOG-mapper	1158614.I592_01116	DNA packaging	NA
UHGV-1398727_32	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1398727_32	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1398727_32	COG	COG5484	NA	NA
UHGV-1398727_32	Structural annotation	NF040601, COG5484	NA	NA
UHGV-1398727_34	PHROG	phrog_10400	NA	unknown function
UHGV-1398727_35	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1398727_35	UniRef90	UniRef90_A0A7U6L5H0	Autolysin	NA
UHGV-1398727_35	eggNOG-mapper	1158602.I590_02984	NA	NA
UHGV-1398727_35	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1398727_35	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-1398727_36	eggNOG-mapper	1158602.I590_02983	NA	NA
UHGV-1398727_37	PHROG	phrog_17548	NA	unknown function
UHGV-1398727_37	eggNOG-mapper	1140002.I570_04022	NA	NA
UHGV-1398727_38	PHROG	phrog_11760	NA	unknown function
UHGV-1398727_38	UniRef90	UniRef90_A0A0E0UWB8	Phenylalanyl-tRNA synthetase, beta subunit	NA
UHGV-1398727_38	eggNOG-mapper	1140002.I570_04023	NA	NA