UHGV-1399487

Genome information

vOTU vOTU-019040

Genome length 36,484 bps

CDS count 65

Completeness 83.08% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-1399487
vOTU ID	vOTU-019040
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0248449
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.12
Jumbo phage	No

Genome content
Genome length	36,484 bps
GC content	50.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.72%
Average CDS length	516.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1399487_1	UniRef90	UniRef90_UPI000C07B2C1	zinc-ribbon domain-containing protein	NA
UHGV-1399487_1	eggNOG-mapper	1280685.AUKC01000037_gene3244	Probable Zinc-ribbon domain	NA
UHGV-1399487_1	Pfam	PF14311	Probable Zinc-ribbon domain	DUF4379
UHGV-1399487_1	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1399487_2	KOfam	K14059	int; integrase	NA
UHGV-1399487_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1399487_2	UniRef90	UniRef90_A0A1C5N3H1	Integrase	NA
UHGV-1399487_2	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1399487_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1399487_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1399487_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1399487_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1399487_3	PHROG	phrog_21094	NA	unknown function
UHGV-1399487_3	UniRef90	UniRef90_W1SPA0	Putative Lj965 prophage protein	NA
UHGV-1399487_3	eggNOG-mapper	198467.NP92_02665	NA	NA
UHGV-1399487_4	PHROG	phrog_5059	NA	unknown function
UHGV-1399487_4	UniRef90	UniRef90_UPI0005EB2646	NA	NA
UHGV-1399487_4	eggNOG-mapper	869209.Tresu_1634	NA	NA
UHGV-1399487_4	Pfam	PF08861	NA	DUF1828
UHGV-1399487_4	Pfam	PF08862	NA	DUF1829
UHGV-1399487_4	Structural annotation	PF08862, PF08861, MF_00722, COG3372	NA	NA
UHGV-1399487_6	PHROG	phrog_87	metallo-protease	other
UHGV-1399487_6	UniRef90	UniRef90_UPI001D022F2C	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1399487_6	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-1399487_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1399487_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1399487_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1399487_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1399487_7	UniRef90	UniRef90_UPI0018AC325F	helix-turn-helix transcriptional regulator	NA
UHGV-1399487_7	eggNOG-mapper	1226322.HMPREF1545_00087	sequence-specific DNA binding	NA
UHGV-1399487_7	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1399487_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1399487_7	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1399487_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1399487_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1399487_8	UniRef90	UniRef90_UPI0009FAA490	helix-turn-helix domain-containing protein	NA
UHGV-1399487_8	eggNOG-mapper	1519439.JPJG01000066_gene2398	Helix-turn-helix XRE-family like proteins	NA
UHGV-1399487_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1399487_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1399487_12	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-1399487_14	Structural annotation	PF13560	NA	NA
UHGV-1399487_15	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1399487_15	UniRef90	UniRef90_UPI001C126E67	ERF family protein	NA
UHGV-1399487_15	eggNOG-mapper	97138.C820_00777	ERF superfamily	NA
UHGV-1399487_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-1399487_15	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1399487_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1399487_16	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-1399487_16	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1399487_16	Structural annotation	PF05772	NA	NA
UHGV-1399487_17	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1399487_17	UniRef90	UniRef90_A0A2Z4QA94	Recombination protein	NA
UHGV-1399487_17	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-1399487_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1399487_18	PHROG	phrog_4973	NA	unknown function
UHGV-1399487_18	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-1399487_18	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-1399487_18	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1399487_18	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1399487_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1399487_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1399487_19	UniRef90	UniRef90_A0A8J7VJS5	Single-stranded DNA-binding protein	NA
UHGV-1399487_19	eggNOG-mapper	552398.HMPREF0866_02510	Single-stranded DNA-binding protein	NA
UHGV-1399487_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1399487_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1399487_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1399487_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1399487_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1399487_20	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1399487_20	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-1399487_20	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-1399487_20	Structural annotation	PF01475, MF_01819, NF006999, COG0735	NA	NA
UHGV-1399487_21	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-1399487_21	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1399487_21	UniRef90	UniRef90_A0A1C5N602	DNA repair protein RadA	NA
UHGV-1399487_21	eggNOG-mapper	1378168.N510_01441	NA	NA
UHGV-1399487_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1399487_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-1399487_21	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-1399487_23	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1399487_26	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1399487_26	UniRef90	UniRef90_UPI00189D46F4	DNA cytosine methyltransferase	NA
UHGV-1399487_26	eggNOG-mapper	485918.Cpin_3834	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1399487_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1399487_26	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1399487_27	UniRef90	UniRef90_A0A4D7ANR2	Lar family restriction alleviation protein	NA
UHGV-1399487_27	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-1399487_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1399487_27	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1399487_28	PHROG	phrog_5765	NA	unknown function
UHGV-1399487_28	UniRef90	UniRef90_UPI00115D67B4	BC1881 family protein	NA
UHGV-1399487_28	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-1399487_28	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-1399487_29	PHROG	phrog_3292	NA	unknown function
UHGV-1399487_29	UniRef90	UniRef90_A0A1V0QCT8	KTSC domain-containing protein	NA
UHGV-1399487_29	eggNOG-mapper	748727.CLJU_c31420	KTSC domain	NA
UHGV-1399487_29	Pfam	PF13619	KTSC domain	KTSC
UHGV-1399487_29	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-1399487_29	Structural annotation	PF13619	NA	NA
UHGV-1399487_30	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-1399487_30	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-1399487_32	PHROG	phrog_25732	NA	unknown function
UHGV-1399487_32	Structural annotation	PF21327, NF011240	NA	NA
UHGV-1399487_35	Structural annotation	PF10711, TIGR03433	NA	NA
UHGV-1399487_37	PHROG	phrog_38832	NA	unknown function
UHGV-1399487_38	PHROG	phrog_22543	NA	unknown function
UHGV-1399487_40	PHROG	phrog_1934	NA	unknown function
UHGV-1399487_40	UniRef90	UniRef90_UPI0018AC0226	zinc-finger-containing protein	NA
UHGV-1399487_40	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-1399487_40	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-1399487_40	Structural annotation	PF11672	NA	NA
UHGV-1399487_41	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-1399487_42	PHROG	phrog_8684	NA	unknown function
UHGV-1399487_42	UniRef90	UniRef90_A0A810QGV2	YopX domain-containing protein	NA
UHGV-1399487_42	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-1399487_42	Pfam	PF09643	YopX protein	YopX
UHGV-1399487_42	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1399487_44	UniRef90	UniRef90_A0A1H1GVZ7	NA	NA
UHGV-1399487_44	Pfam	PF04448	NA	DUF551
UHGV-1399487_45	UniRef90	UniRef90_U2R3C0	Nascent polypeptide-associated complex domain protein	NA
UHGV-1399487_45	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1399487_45	Structural annotation	PF13542	NA	NA
UHGV-1399487_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1399487_46	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1399487_46	UniRef90	UniRef90_U2QJE0	Phage terminase, large subunit, PBSX family	NA
UHGV-1399487_46	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1399487_46	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1399487_46	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1399487_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1399487_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-1399487_46	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1399487_47	PHROG	phrog_533	portal protein	head and packaging
UHGV-1399487_47	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-1399487_47	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1399487_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1399487_47	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1399487_48	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1399487_48	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-1399487_48	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1399487_48	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1399487_48	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1399487_48	COG	COG2369	NA	NA
UHGV-1399487_48	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-1399487_49	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-1399487_50	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1399487_50	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-1399487_50	AcrCatalog	cluster_74817	NA	NA
UHGV-1399487_51	PHROG	phrog_10	major head protein	head and packaging
UHGV-1399487_51	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-1399487_51	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1399487_51	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1399487_51	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1399487_51	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1399487_51	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1399487_52	UniRef90	UniRef90_A0A8J6J3F8	Cadherin-like beta sandwich domain-containing protein	NA
UHGV-1399487_52	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1399487_53	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1399487_53	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-1399487_54	PHROG	phrog_3366	NA	unknown function
UHGV-1399487_54	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1399487_54	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1399487_55	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1399487_55	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-1399487_55	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1399487_55	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1399487_55	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1399487_56	PHROG	phrog_3266	tail completion	connector
UHGV-1399487_56	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1399487_56	Structural annotation	PF12691	NA	NA
UHGV-1399487_57	PHROG	phrog_3099	NA	unknown function
UHGV-1399487_57	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-1399487_57	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-1399487_58	PHROG	phrog_11299	NA	unknown function
UHGV-1399487_58	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1399487_58	Structural annotation	PF10666	NA	NA
UHGV-1399487_59	PHROG	phrog_706	NA	unknown function
UHGV-1399487_59	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-1399487_59	eggNOG-mapper	1235797.C816_04184	Bacteriophage Gp15 protein	NA
UHGV-1399487_59	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1399487_59	Structural annotation	PF06854	NA	NA
UHGV-1399487_60	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-1399487_60	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-1399487_61	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1399487_61	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-1399487_61	COG	COG1511	NA	NA
UHGV-1399487_61	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1399487_62	PHROG	phrog_1194	NA	unknown function
UHGV-1399487_62	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-1399487_62	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1399487_63	PHROG	phrog_32744	NA	unknown function
UHGV-1399487_63	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-1399487_63	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-1399487_65	eggNOG-mapper	1297617.JPJD01000099_gene2171	Collagen triple helix repeat protein	NA
UHGV-1399487_65	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA