UHGV-1399738

Genome information

Genome length 19,134 bps

CDS count 28

Completeness 57.09% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1399738
vOTU ID	vOTU-034328
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0138694
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.84
Jumbo phage	No

Genome content
Genome length	19,134 bps
GC content	56.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	94.99%
Average CDS length	653.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1399738_1	PHROG	phrog_9534	head protein	head and packaging
UHGV-1399738_1	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA
UHGV-1399738_1	Structural annotation	PF21567	NA	NA
UHGV-1399738_2	PHROG	phrog_538	minor tail protein	tail
UHGV-1399738_2	UniRef90	UniRef90_UPI000E1FC11A	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1399738_2	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-1399738_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1399738_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1399738_3	PHROG	phrog_36410	NA	unknown function
UHGV-1399738_3	UniRef90	UniRef90_A0A3A6ECR2	Phage tail family protein	NA
UHGV-1399738_3	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-1399738_3	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1399738_4	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-1399738_4	eggNOG-mapper	561177.ANHYDRO_01418	Phage tail tape measure protein, TP901 family	NA
UHGV-1399738_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1399738_7	PHROG	phrog_885	major tail protein	tail
UHGV-1399738_7	UniRef90	UniRef90_UPI000BE41A82	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-1399738_7	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-1399738_7	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-1399738_7	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1399738_8	Structural annotation	PF12691	NA	NA
UHGV-1399738_9	UniRef90	UniRef90_A0A562JCX1	HK97 gp10 family phage protein	NA
UHGV-1399738_9	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-1399738_9	Structural annotation	TIGR01725	NA	NA
UHGV-1399738_10	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1399738_10	UniRef90	UniRef90_A0A410PWX2	Phage head-tail adapter protein	NA
UHGV-1399738_10	eggNOG-mapper	324057.Pjdr2_1546	head-tail adaptor	NA
UHGV-1399738_10	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1399738_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1399738_11	PHROG	phrog_5223	neck protein	connector
UHGV-1399738_11	UniRef90	UniRef90_UPI00073F29ED	head-tail connector protein	NA
UHGV-1399738_11	eggNOG-mapper	411471.SUBVAR_05853	NA	NA
UHGV-1399738_11	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1399738_11	Structural annotation	TIGR01560	NA	NA
UHGV-1399738_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-1399738_12	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-1399738_12	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1399738_12	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1399738_13	KOfam	K06904	NA	NA
UHGV-1399738_13	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1399738_13	UniRef90	UniRef90_D1PND0	Phage prohead protease, HK97 family	NA
UHGV-1399738_13	eggNOG-mapper	411471.SUBVAR_05851	Caudovirus prohead serine protease	NA
UHGV-1399738_13	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1399738_13	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1399738_13	COG	COG3740	Phage head maturation protease	NA
UHGV-1399738_13	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1399738_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-1399738_14	UniRef90	UniRef90_UPI00195C5E58	phage portal protein	NA
UHGV-1399738_14	eggNOG-mapper	742740.HMPREF9474_04306	Phage portal protein	NA
UHGV-1399738_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1399738_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1399738_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1399738_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1399738_15	UniRef90	UniRef90_D1PNC7	Putative phage terminase, large subunit	NA
UHGV-1399738_15	eggNOG-mapper	411471.SUBVAR_05848	large subunit	NA
UHGV-1399738_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1399738_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1399738_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1399738_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1399738_16	PHROG	phrog_13845	NA	unknown function
UHGV-1399738_16	eggNOG-mapper	508419.F8J158_9CAUD	NA	NA
UHGV-1399738_16	Structural annotation	PF05119, COG3747	NA	NA
UHGV-1399738_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1399738_17	UniRef90	UniRef90_UPI0005937579	HNH endonuclease	NA
UHGV-1399738_17	eggNOG-mapper	543734.LCABL_09800	HNH endonuclease	NA
UHGV-1399738_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1399738_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1399738_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1399738_18	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-1399738_18	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-1399738_18	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1399738_18	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1399738_21	Structural annotation	PF01396	NA	NA
UHGV-1399738_22	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1399738_22	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1399738_22	UniRef90	UniRef90_A0A3E2U3E3	DNA helicase	NA
UHGV-1399738_22	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-1399738_22	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1399738_22	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1399738_22	COG	COG0305	Replicative DNA helicase	NA
UHGV-1399738_22	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1399738_23	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1399738_23	UniRef90	UniRef90_A0A3E2U1Y3	Helix-turn-helix domain-containing protein	NA
UHGV-1399738_23	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1399738_23	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1399738_23	Structural annotation	PF05584, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-1399738_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1399738_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1399738_24	UniRef90	UniRef90_A0A3E2U1Y5	Single-stranded DNA-binding protein	NA
UHGV-1399738_24	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-1399738_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1399738_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1399738_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1399738_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1399738_24	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1399738_25	PHROG	phrog_7566	NA	unknown function
UHGV-1399738_25	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-1399738_26	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1399738_26	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-1399738_26	Pfam	PF05772	NinB protein	NinB
UHGV-1399738_26	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1399738_27	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA