UHGV-1400020

Genome information

Genome length 38,048 bps

CDS count 43

Completeness 92.06% (high-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-1400020
vOTU ID	vOTU-064740
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0257661
BioSample	SAMEA3665078
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.05
Jumbo phage	No

Genome content
Genome length	38,048 bps
GC content	59.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.33%
Average CDS length	829.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1400020_1	Structural annotation	PF20622, NF033814	NA	NA
UHGV-1400020_2	PHROG	phrog_22978	NA	unknown function
UHGV-1400020_2	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1400020_2	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-1400020_3	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1400020_5	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1400020_5	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-1400020_5	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1400020_6	PHROG	phrog_12105	NA	unknown function
UHGV-1400020_6	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1400020_7	PHROG	phrog_15239	NA	unknown function
UHGV-1400020_8	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1400020_8	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1400020_8	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1400020_8	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1400020_9	PHROG	phrog_13908	NA	unknown function
UHGV-1400020_9	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1400020_10	KOfam	K07584	NA	NA
UHGV-1400020_10	PHROG	phrog_4478	peptidase	other
UHGV-1400020_10	eggNOG-mapper	521098.Aaci_1816	Cysteine protease Prp	NA
UHGV-1400020_10	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1400020_10	COG	COG2868	NA	NA
UHGV-1400020_10	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-1400020_11	PHROG	phrog_156	portal protein	head and packaging
UHGV-1400020_11	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1400020_11	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1400020_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1400020_12	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1400020_12	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1400020_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1400020_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-1400020_12	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1400020_13	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-1400020_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1400020_15	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1400020_15	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1400020_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1400020_15	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1400020_16	PHROG	phrog_474	phosphofructokinase	other
UHGV-1400020_16	eggNOG-mapper	665956.HMPREF1032_00639	NA	NA
UHGV-1400020_16	Pfam	PF19905	NA	DUF6378
UHGV-1400020_16	Structural annotation	PF19905	NA	NA
UHGV-1400020_17	PHROG	phrog_21498	NA	unknown function
UHGV-1400020_17	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-1400020_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1400020_17	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-1400020_23	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1400020_23	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-1400020_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1400020_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1400020_23	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1400020_24	PHROG	phrog_38832	NA	unknown function
UHGV-1400020_24	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1400020_28	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1400020_28	eggNOG-mapper	644966.Tmar_0029	HNH endonuclease	NA
UHGV-1400020_28	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-1400020_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1400020_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1400020_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1400020_29	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-1400020_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1400020_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1400020_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1400020_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1400020_29	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1400020_30	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1400020_30	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1400020_30	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-1400020_30	Pfam	PF03837	RecT family	RecT
UHGV-1400020_30	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1400020_30	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1400020_30	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1400020_31	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-1400020_32	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1400020_32	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-1400020_32	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1400020_32	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1400020_32	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1400020_32	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1400020_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1400020_34	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-1400020_34	eggNOG-mapper	657322.FPR_23140	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1400020_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1400020_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1400020_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1400020_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1400020_35	eggNOG-mapper	755731.Clo1100_3595	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1400020_35	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1400020_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1400020_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1400020_37	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-1400020_37	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1400020_38	eggNOG-mapper	1321782.HMPREF1986_00318	NA	NA
UHGV-1400020_38	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-1400020_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1400020_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1400020_39	eggNOG-mapper	1226322.HMPREF1545_00980	DNA-binding helix-turn-helix protein	NA
UHGV-1400020_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1400020_39	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1400020_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1400020_40	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1400020_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1400020_40	eggNOG-mapper	608538.HTH_1322	PBP superfamily domain	NA
UHGV-1400020_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1400020_40	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1400020_40	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1400020_42	KOfam	K14059	int; integrase	NA
UHGV-1400020_42	PHROG	phrog_1	integrase	integration and excision
UHGV-1400020_42	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-1400020_42	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1400020_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1400020_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1400020_42	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA