UHGV-1401825

Genome information

vOTU vOTU-020754

Genome length 25,180 bps

CDS count 44

Completeness 74.41% (medium-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-1401825
vOTU ID	vOTU-020754
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0183335
BioSample	NA
Country	Canada
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.96
Jumbo phage	No

Genome content
Genome length	25,180 bps
GC content	39.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.35%
Average CDS length	545.05 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1401825_5	Structural annotation	PF21596	NA	NA
UHGV-1401825_6	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1401825_6	UniRef90	UniRef90_A0A410PZR1	Siphovirus Gp157 family protein	NA
UHGV-1401825_6	eggNOG-mapper	40522.A8ASN2_BPA50	Siphovirus Gp157	NA
UHGV-1401825_6	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1401825_6	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1401825_7	PHROG	phrog_14970	NA	unknown function
UHGV-1401825_7	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-1401825_7	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-1401825_7	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1401825_7	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1401825_7	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1401825_8	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1401825_8	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1401825_8	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1401825_8	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1401825_9	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1401825_9	UniRef90	UniRef90_R5XZW2	HNH domain-containing protein	NA
UHGV-1401825_9	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-1401825_9	Pfam	PF09699	Doubled CXXCH motif (Paired_CXXCH_1)	Paired_CXXCH_1
UHGV-1401825_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1401825_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1401825_10	UniRef90	UniRef90_A0A4Z0YC28	Single-stranded DNA-binding protein	NA
UHGV-1401825_10	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-1401825_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1401825_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1401825_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1401825_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1401825_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1401825_11	PHROG	phrog_2113	NA	unknown function
UHGV-1401825_11	Structural annotation	PF21715, COG1654	NA	NA
UHGV-1401825_12	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-1401825_12	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-1401825_12	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-1401825_12	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1401825_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1401825_12	Structural annotation	PF14297	NA	NA
UHGV-1401825_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1401825_13	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1401825_13	UniRef90	UniRef90_A0A7X5DCG3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1401825_13	eggNOG-mapper	272563.CD630_09360	Endodeoxyribonuclease RusA	NA
UHGV-1401825_13	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1401825_13	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1401825_13	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1401825_15	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1401825_15	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-1401825_15	eggNOG-mapper	1095743.HMPREF1054_1827	Helix-turn-helix domain	NA
UHGV-1401825_15	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1401825_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1401825_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1401825_16	PHROG	phrog_5444	NA	unknown function
UHGV-1401825_16	eggNOG-mapper	1239384.K4MPU6_9CAUD	NA	NA
UHGV-1401825_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1401825_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1401825_17	UniRef90	UniRef90_A0A6N9QF69	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1401825_17	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-1401825_17	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1401825_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1401825_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1401825_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1401825_17	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1401825_20	PHROG	phrog_924	NA	unknown function
UHGV-1401825_20	UniRef90	UniRef90_A0A6H1ZAY1	NA	NA
UHGV-1401825_20	Pfam	PF04448	NA	DUF551
UHGV-1401825_20	Structural annotation	NF041588	NA	NA
UHGV-1401825_23	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1401825_23	UniRef90	UniRef90_UPI001A992566	ASCH domain-containing protein	NA
UHGV-1401825_23	eggNOG-mapper	1280689.AUJC01000003_gene948	NA	NA
UHGV-1401825_23	Pfam	PF12961	NA	DUF3850
UHGV-1401825_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1401825_23	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-1401825_24	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1401825_24	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1401825_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1401825_27	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1401825_27	UniRef90	UniRef90_Q9A0P6	Methyltransferase	NA
UHGV-1401825_27	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-1401825_27	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1401825_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1401825_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1401825_27	COG	COG0863	DNA modification methylase	NA
UHGV-1401825_27	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1401825_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1401825_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1401825_28	UniRef90	UniRef90_A0A6N3ALZ5	Terminase-like family protein	NA
UHGV-1401825_28	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-1401825_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1401825_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1401825_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1401825_28	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1401825_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-1401825_29	UniRef90	UniRef90_A7VTB1	Phage minor capsid protein	NA
UHGV-1401825_29	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-1401825_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1401825_29	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1401825_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG3567	NA	NA
UHGV-1401825_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1401825_30	UniRef90	UniRef90_A7VTB0	Phage minor capsid protein 2	NA
UHGV-1401825_30	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1401825_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1401825_30	COG	COG2369	NA	NA
UHGV-1401825_30	Structural annotation	PF06152	NA	NA
UHGV-1401825_32	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-1401825_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-1401825_34	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-1401825_34	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-1401825_34	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1401825_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1401825_35	eggNOG-mapper	1158602.I590_02994	NA	NA
UHGV-1401825_36	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-1401825_36	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-1401825_36	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1401825_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1401825_37	UniRef90	UniRef90_A0A6A7K9U7	Minor capsid protein	NA
UHGV-1401825_37	eggNOG-mapper	428125.CLOLEP_00180	Minor capsid protein	NA
UHGV-1401825_37	Structural annotation	PF11114	NA	NA
UHGV-1401825_38	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1401825_38	Structural annotation	PF12691	NA	NA
UHGV-1401825_39	PHROG	phrog_820	major tail protein	tail
UHGV-1401825_39	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-1401825_39	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-1401825_39	COG	COG5492	NA	NA
UHGV-1401825_40	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-1401825_40	Structural annotation	PF10666	NA	NA
UHGV-1401825_41	PHROG	phrog_706	NA	unknown function
UHGV-1401825_41	UniRef90	UniRef90_UPI000C819E80	Gp15 family bacteriophage protein	NA
UHGV-1401825_41	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-1401825_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1401825_41	Structural annotation	PF06854	NA	NA
UHGV-1401825_42	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1401825_42	UniRef90	UniRef90_A7VT93	Phage tail tape measure protein, TP901 family	NA
UHGV-1401825_42	eggNOG-mapper	428125.CLOLEP_01785	tail tape measure protein, TP901	NA
UHGV-1401825_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1401825_42	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1401825_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1401825_43	eggNOG-mapper	428125.CLOLEP_00173	NA	NA
UHGV-1401825_43	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1401825_44	PHROG	phrog_17472	tail protein	tail
UHGV-1401825_44	eggNOG-mapper	33035.JPJF01000023_gene3223	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1401825_44	COG	COG4675	Phage tail collar domain	NA