UHGV-1403314

Genome information

vOTU vOTU-019868

Genome length 27,512 bps

CDS count 42

Completeness 69.10% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-1403314
vOTU ID	vOTU-019868
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0197389
BioSample	SAMEA3879534
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.82
Jumbo phage	No

Genome content
Genome length	27,512 bps
GC content	43.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	95.81%
Average CDS length	631.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1403314_2	UniRef90	UniRef90_UPI001D0A947F	helix-turn-helix transcriptional regulator	NA
UHGV-1403314_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1403314_2	Structural annotation	PF13443, MF_02017, NF041951, COG3655	NA	NA
UHGV-1403314_5	Structural annotation	PF19824, TIGR03090	NA	NA
UHGV-1403314_6	PHROG	phrog_1863	NA	unknown function
UHGV-1403314_7	PHROG	phrog_443	holin	lysis
UHGV-1403314_7	UniRef90	UniRef90_UPI001896A9B9	holin	NA
UHGV-1403314_7	eggNOG-mapper	1125712.HMPREF1316_2355	Putative lactococcus lactis phage r1t holin	NA
UHGV-1403314_7	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1403314_7	Structural annotation	PF16945	NA	NA
UHGV-1403314_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1403314_9	PHROG	phrog_16490	NA	unknown function
UHGV-1403314_9	eggNOG-mapper	1235790.C805_00060	NA	NA
UHGV-1403314_10	PHROG	phrog_22984	NA	unknown function
UHGV-1403314_11	PHROG	phrog_21718	NA	unknown function
UHGV-1403314_11	UniRef90	UniRef90_A0A8D9PDT7	Membrane fusogenic activity protein	NA
UHGV-1403314_11	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1403314_13	PHROG	phrog_11037	NA	unknown function
UHGV-1403314_13	UniRef90	UniRef90_UPI001D0AE32A	SH3 domain-containing protein	NA
UHGV-1403314_13	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-1403314_13	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1403314_13	Structural annotation	PF08460, PF01551, NF040883, NF033202, COG0739, COG4991	NA	NA
UHGV-1403314_14	PHROG	phrog_134	NA	unknown function
UHGV-1403314_14	UniRef90	UniRef90_A0A373VIX2	XkdX family protein	NA
UHGV-1403314_14	eggNOG-mapper	396513.SCA_0513	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1403314_14	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1403314_14	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1403314_14	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1403314_15	PHROG	phrog_24451	NA	unknown function
UHGV-1403314_15	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-1403314_16	PHROG	phrog_4492	tail fiber protein	tail
UHGV-1403314_16	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-1403314_16	Structural annotation	PF20086, TIGR04362	NA	NA
UHGV-1403314_18	UniRef90	UniRef90_UPI001D0A6980	fibronectin type III domain-containing protein	NA
UHGV-1403314_18	eggNOG-mapper	555500.I215_02753	Fibronectin type III domain	NA
UHGV-1403314_18	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1403314_18	COG	COG2335	Uncaracterized surface protein containing fasciclin (FAS1) repeats	NA
UHGV-1403314_18	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-1403314_19	PHROG	phrog_9534	head protein	head and packaging
UHGV-1403314_19	UniRef90	UniRef90_UPI0011598740	structural protein	NA
UHGV-1403314_19	eggNOG-mapper	1234664.AMRO01000024_gene1819	NA	NA
UHGV-1403314_19	Structural annotation	PF20747	NA	NA
UHGV-1403314_20	PHROG	phrog_538	minor tail protein	tail
UHGV-1403314_20	UniRef90	UniRef90_UPI001D0B76DC	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1403314_20	eggNOG-mapper	411468.CLOSCI_00538	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1403314_20	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1403314_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1403314_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1403314_21	UniRef90	UniRef90_UPI001D0AA3C9	phage tail family protein	NA
UHGV-1403314_21	eggNOG-mapper	428127.EUBDOL_01213	phage tail	NA
UHGV-1403314_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-1403314_21	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1403314_22	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-1403314_22	UniRef90	UniRef90_UPI001D0A3DB9	tape measure protein	NA
UHGV-1403314_22	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-1403314_22	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1403314_22	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1403314_22	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1403314_22	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1403314_23	PHROG	phrog_706	NA	unknown function
UHGV-1403314_23	UniRef90	UniRef90_UPI001D0AAED0	bacteriophage Gp15 family protein	NA
UHGV-1403314_23	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-1403314_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1403314_23	Structural annotation	PF06854	NA	NA
UHGV-1403314_24	Structural annotation	PF10666	NA	NA
UHGV-1403314_25	PHROG	phrog_3099	NA	unknown function
UHGV-1403314_25	eggNOG-mapper	1321782.HMPREF1986_02273	NA	NA
UHGV-1403314_25	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1403314_26	UniRef90	UniRef90_UPI001D09DA0D	ABC transporter permease	NA
UHGV-1403314_26	Structural annotation	PF16807	NA	NA
UHGV-1403314_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1403314_27	UniRef90	UniRef90_UPI001D09B824	minor capsid protein	NA
UHGV-1403314_27	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-1403314_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1403314_27	Structural annotation	PF11114	NA	NA
UHGV-1403314_28	UniRef90	UniRef90_UPI001E2BB5D0	minor capsid protein	NA
UHGV-1403314_28	Structural annotation	PF20536	NA	NA
UHGV-1403314_30	PHROG	phrog_212	major head protein	head and packaging
UHGV-1403314_30	UniRef90	UniRef90_UPI00189A455D	phage capsid protein	NA
UHGV-1403314_30	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-1403314_30	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1403314_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1403314_31	UniRef90	UniRef90_UPI001D0A686C	phage scaffolding protein	NA
UHGV-1403314_31	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-1403314_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1403314_31	Structural annotation	PF06810	NA	NA
UHGV-1403314_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1403314_33	UniRef90	UniRef90_UPI001D0B3D9B	phage minor capsid protein	NA
UHGV-1403314_33	eggNOG-mapper	552396.HMPREF0863_00280	Phage minor capsid protein 2	NA
UHGV-1403314_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1403314_33	COG	COG2369	NA	NA
UHGV-1403314_33	Structural annotation	PF06152	NA	NA
UHGV-1403314_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-1403314_34	UniRef90	UniRef90_UPI001430A874	phage portal protein	NA
UHGV-1403314_34	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-1403314_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1403314_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1403314_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1403314_35	UniRef90	UniRef90_UPI001D0AA0D4	terminase family protein	NA
UHGV-1403314_35	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-1403314_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1403314_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-1403314_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1403314_36	PHROG	phrog_2412	NA	unknown function
UHGV-1403314_36	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-1403314_36	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-1403314_37	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1403314_37	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1403314_37	UniRef90	UniRef90_UPI001D0A8584	DNA modification methylase	NA
UHGV-1403314_37	eggNOG-mapper	521003.COLINT_02335	DNA methylase	NA
UHGV-1403314_37	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1403314_37	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1403314_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1403314_37	COG	COG0863	DNA modification methylase	NA
UHGV-1403314_37	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1403314_38	Structural annotation	TIGR01637	NA	NA
UHGV-1403314_39	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1403314_39	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1403314_39	UniRef90	UniRef90_UPI001E5F6A13	DEAD/DEAH box helicase	NA
UHGV-1403314_39	eggNOG-mapper	552396.HMPREF0863_00284	SNF2 family N-terminal domain	NA
UHGV-1403314_39	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1403314_39	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1403314_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1403314_39	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1403314_39	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1403314_40	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1403314_40	UniRef90	UniRef90_UPI00189BA373	VRR-NUC domain-containing protein	NA
UHGV-1403314_40	eggNOG-mapper	1122146.AUHP01000010_gene1025	VRR_NUC	NA
UHGV-1403314_40	Structural annotation	PF01870, MF_00130, NF040854, COG1591	NA	NA
UHGV-1403314_42	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1403314_42	UniRef90	UniRef90_A0A413KAN3	MazG domain-containing protein	NA
UHGV-1403314_42	eggNOG-mapper	326426.Bbr_0313	NA	NA