UHGV-1403755

Genome information

Genome length 24,966 bps

CDS count 30

Completeness 75.71% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-1403755
vOTU ID	vOTU-030337
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0181930
BioSample	NA
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.88
Jumbo phage	No

Genome content
Genome length	24,966 bps
GC content	49.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	94.03%
Average CDS length	786.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1403755_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1403755_1	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-1403755_1	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1403755_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1403755_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1403755_1	Structural annotation	PF20441, MF_04147, TIGR01547, COG4626	NA	NA
UHGV-1403755_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-1403755_2	UniRef90	UniRef90_A0A7G5N122	Phage portal protein	NA
UHGV-1403755_2	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1403755_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1403755_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1403755_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1403755_3	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1403755_3	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1403755_3	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-1403755_3	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1403755_3	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1403755_3	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1403755_3	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1403755_4	PHROG	phrog_10	major head protein	head and packaging
UHGV-1403755_4	UniRef90	UniRef90_A0A3E3JY53	Phage major capsid protein	NA
UHGV-1403755_4	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1403755_4	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1403755_4	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1403755_4	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1403755_4	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1403755_5	PHROG	phrog_31690	NA	unknown function
UHGV-1403755_5	eggNOG-mapper	1408306.JHXX01000004_gene202	COG3209 Rhs family protein	NA
UHGV-1403755_5	COG	COG3209	NA	NA
UHGV-1403755_5	Structural annotation	PF18207	NA	NA
UHGV-1403755_6	PHROG	phrog_749	NA	unknown function
UHGV-1403755_7	UniRef90	UniRef90_A0A7C6J040	Phage head closure protein	NA
UHGV-1403755_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1403755_8	Structural annotation	PF05657	NA	NA
UHGV-1403755_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1403755_9	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1403755_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1403755_9	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1403755_10	PHROG	phrog_88	major tail protein	tail
UHGV-1403755_10	UniRef90	UniRef90_A0A3B8UAW5	Phage tail protein	NA
UHGV-1403755_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1403755_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1403755_11	PHROG	phrog_1021	NA	unknown function
UHGV-1403755_12	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1403755_12	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1403755_12	UniRef90	UniRef90_A0A3B8U3Q5	Phage tail tape measure protein	NA
UHGV-1403755_12	eggNOG-mapper	1123263.AUKY01000027_gene836	Tail tape measure protein, TP901 family	NA
UHGV-1403755_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1403755_12	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1403755_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1403755_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1403755_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1403755_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1403755_13	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-1403755_13	eggNOG-mapper	272562.CA_C0062	tail component	NA
UHGV-1403755_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-1403755_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1403755_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1403755_14	UniRef90	UniRef90_UPI001B218541	phage tail protein	NA
UHGV-1403755_14	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-1403755_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1403755_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1403755_14	COG	COG4926	Phage-related protein	NA
UHGV-1403755_15	PHROG	phrog_372	tail protein	tail
UHGV-1403755_15	UniRef90	UniRef90_UPI001D03153A	NA	NA
UHGV-1403755_15	eggNOG-mapper	1308863.U5J9V2_9CAUD	NA	NA
UHGV-1403755_15	Pfam	PF05895	NA	DUF859
UHGV-1403755_15	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1403755_16	PHROG	phrog_16573	NA	unknown function
UHGV-1403755_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1403755_17	PHROG	phrog_19280	NA	unknown function
UHGV-1403755_17	UniRef90	UniRef90_A0A395VC32	NA	NA
UHGV-1403755_17	eggNOG-mapper	1235797.C816_02837	NA	NA
UHGV-1403755_17	Pfam	PF19789	NA	DUF6273
UHGV-1403755_17	Structural annotation	PF19789	NA	NA
UHGV-1403755_18	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-1403755_18	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-1403755_19	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1403755_19	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1403755_19	UniRef90	UniRef90_A0A412ELW9	Reverse transcriptase domain-containing protein	NA
UHGV-1403755_19	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1403755_19	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1403755_19	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1403755_19	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1403755_19	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1403755_21	UniRef90	UniRef90_UPI0015709683	XkdX family protein	NA
UHGV-1403755_21	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1403755_21	Structural annotation	PF20787, TIGR01669	NA	NA
UHGV-1403755_22	PHROG	phrog_443	holin	lysis
UHGV-1403755_22	UniRef90	UniRef90_UPI001C37FC92	holin	NA
UHGV-1403755_22	eggNOG-mapper	1163671.JAGI01000002_gene1943	Putative lactococcus lactis phage r1t holin	NA
UHGV-1403755_22	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1403755_22	Structural annotation	PF16945	NA	NA
UHGV-1403755_24	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1403755_24	PHROG	phrog_20388	endolysin	lysis
UHGV-1403755_24	UniRef90	UniRef90_UPI00195D8F98	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1403755_24	eggNOG-mapper	1200567.JNKD01000098_gene813	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1403755_24	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1403755_24	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1403755_24	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1403755_25	KOfam	K14059	int; integrase	NA
UHGV-1403755_25	PHROG	phrog_1	integrase	integration and excision
UHGV-1403755_25	UniRef90	UniRef90_A0A1C6FMQ0	Site-specific tyrosine recombinase XerC	NA
UHGV-1403755_25	eggNOG-mapper	1507.HMPREF0262_00420	Belongs to the 'phage' integrase family	NA
UHGV-1403755_25	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1403755_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1403755_25	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1403755_26	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1403755_26	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1403755_26	UniRef90	UniRef90_E7GN91	HTH cro/C1-type domain-containing protein	NA
UHGV-1403755_26	eggNOG-mapper	1029718.SFBM_0091	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1403755_26	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1403755_26	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1403755_26	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1403755_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1403755_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1403755_29	UniRef90	UniRef90_A0A0P8WJ57	Bro-N domain-containing protein	NA
UHGV-1403755_29	eggNOG-mapper	290402.Cbei_3198	Phage antirepressor protein	NA
UHGV-1403755_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1403755_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1403755_29	COG	COG3617	Prophage antirepressor	NA
UHGV-1403755_29	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-1403755_30	UniRef90	UniRef90_A0A318KSF3	3D (Asp-Asp-Asp) domain-containing protein	NA
UHGV-1403755_30	Pfam	PF06725	3D domain	3D
UHGV-1403755_30	COG	COG3583	NA	NA