UHGV-1403766

Genome information

Genome length 24,964 bps

CDS count 39

Completeness 76.85% (medium-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-1403766
vOTU ID	vOTU-034402
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0181919
BioSample	SAMEA2738046
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.52
Jumbo phage	No

Genome content
Genome length	24,964 bps
GC content	39.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	95.29%
Average CDS length	612.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1403766_2	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-1403766_2	UniRef90	UniRef90_A0A1F1CD60	DNA-binding protein	NA
UHGV-1403766_2	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-1403766_3	PHROG	phrog_5866	NA	unknown function
UHGV-1403766_3	UniRef90	UniRef90_A0A7X3BPB2	HTH merR-type domain-containing protein	NA
UHGV-1403766_3	eggNOG-mapper	35344.A0A097PAT8_BPT12	NA	NA
UHGV-1403766_3	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1403766_4	PHROG	phrog_2113	NA	unknown function
UHGV-1403766_4	UniRef90	UniRef90_A0A6A8V8C7	HTH_11 domain-containing protein	NA
UHGV-1403766_4	eggNOG-mapper	1123314.AUIO01000015_gene674	NA	NA
UHGV-1403766_4	Pfam	PF08279	HTH domain	HTH_11
UHGV-1403766_4	Structural annotation	PF11994, MF_01177, TIGR02944, COG1959	NA	NA
UHGV-1403766_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1403766_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1403766_6	UniRef90	UniRef90_A0A7X2X3C2	Replicative DNA helicase	NA
UHGV-1403766_6	eggNOG-mapper	1123314.AUIO01000016_gene818	Participates in initiation and elongation during chromosome replication	NA
UHGV-1403766_6	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1403766_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1403766_6	NCBIFam	NF004384.0	replicative DNA helicase	NA
UHGV-1403766_6	COG	COG0305	Replicative DNA helicase	NA
UHGV-1403766_6	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1403766_7	PHROG	phrog_1163	NA	unknown function
UHGV-1403766_7	UniRef90	UniRef90_A0A7X2X364	DnaD domain protein	NA
UHGV-1403766_7	eggNOG-mapper	1214184.ALKY01000039_gene945	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1403766_7	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1403766_7	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1403766_7	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1403766_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1403766_7	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG0640	NA	NA
UHGV-1403766_8	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1403766_8	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1403766_8	UniRef90	UniRef90_A0A4D6B4J6	DNA helicase loader	NA
UHGV-1403766_8	eggNOG-mapper	888049.HMPREF8578_0284	DNA-dependent DNA replication	NA
UHGV-1403766_8	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1403766_8	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1403766_8	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-1403766_9	PHROG	phrog_1992	MazG-like pyrophosphatase	other
UHGV-1403766_9	UniRef90	UniRef90_A0A4D6B3B6	DNA-binding protein	NA
UHGV-1403766_9	eggNOG-mapper	365659.smi_0435	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1403766_9	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1403766_9	Structural annotation	PF08761, COG4508	NA	NA
UHGV-1403766_10	PHROG	phrog_236	nucleotide kinase	other
UHGV-1403766_10	UniRef90	UniRef90_UPI0019553FA4	NA	NA
UHGV-1403766_10	eggNOG-mapper	1403946.Q615_SPAC00127G0145	NA	NA
UHGV-1403766_10	Pfam	PF11753	NA	DUF3310
UHGV-1403766_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1403766_11	UniRef90	UniRef90_A0A4D6B234	HTH cro/C1-type domain-containing protein	NA
UHGV-1403766_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1403766_11	Structural annotation	PF01381, MF_00535, NF041575, COG3655	NA	NA
UHGV-1403766_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1403766_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1403766_13	UniRef90	UniRef90_A0A7X2X333	Single-stranded DNA-binding protein	NA
UHGV-1403766_13	eggNOG-mapper	1297534.CAUJ01000005_gene193	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1403766_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1403766_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1403766_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1403766_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1403766_13	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-1403766_14	PHROG	phrog_121	NA	unknown function
UHGV-1403766_14	UniRef90	UniRef90_UPI001896D8BB	NA	NA
UHGV-1403766_14	eggNOG-mapper	1282664.H354_07590	NA	NA
UHGV-1403766_14	Pfam	PF07852	NA	DUF1642
UHGV-1403766_14	Structural annotation	PF07852, PF11061	NA	NA
UHGV-1403766_16	PHROG	phrog_29132	NA	unknown function
UHGV-1403766_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1403766_17	UniRef90	UniRef90_UPI001C8C424D	transcriptional regulator	NA
UHGV-1403766_17	eggNOG-mapper	873447.SPB_0690	Transcriptional regulator, RinA family	NA
UHGV-1403766_17	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1403766_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1403766_18	PHROG	phrog_216	integrase	integration and excision
UHGV-1403766_18	UniRef90	UniRef90_A0A4D6B299	Site-specific recombinase	NA
UHGV-1403766_18	eggNOG-mapper	644007.C5J955_9CAUD	Phage integrase family	NA
UHGV-1403766_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1403766_18	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1403766_19	UniRef90	UniRef90_UPI0003FBCA67	NA	NA
UHGV-1403766_20	PHROG	phrog_121	NA	unknown function
UHGV-1403766_20	UniRef90	UniRef90_A0A6L6LDJ3	NA	NA
UHGV-1403766_20	eggNOG-mapper	365659.smi_0429	NA	NA
UHGV-1403766_20	Pfam	PF07852	NA	DUF1642
UHGV-1403766_20	Structural annotation	PF07852	NA	NA
UHGV-1403766_21	PHROG	phrog_98	NA	unknown function
UHGV-1403766_21	UniRef90	UniRef90_A0A0P0N5Y9	YopX domain-containing protein	NA
UHGV-1403766_21	eggNOG-mapper	768486.EHR_02675	YopX protein	NA
UHGV-1403766_21	Pfam	PF09643	YopX protein	YopX
UHGV-1403766_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1403766_22	PHROG	phrog_5627	NA	unknown function
UHGV-1403766_23	PHROG	phrog_6716	NA	unknown function
UHGV-1403766_23	UniRef90	UniRef90_A0A6G2DMY6	3-dehydroquinate synthase	NA
UHGV-1403766_23	Structural annotation	PF10694	NA	NA
UHGV-1403766_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1403766_24	UniRef90	UniRef90_A0A062WSH4	Bacteriophage nuclease	NA
UHGV-1403766_24	eggNOG-mapper	888049.HMPREF8578_0692	endonuclease activity	NA
UHGV-1403766_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1403766_25	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1403766_25	UniRef90	UniRef90_A0A414CIM9	POU-specific domain-containing protein	NA
UHGV-1403766_25	eggNOG-mapper	1316408.HSISM1_1050	Phage terminase, small subunit	NA
UHGV-1403766_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1403766_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1403766_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1403766_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1403766_26	UniRef90	UniRef90_A0A7G1IQ86	Terminase	NA
UHGV-1403766_26	eggNOG-mapper	888049.HMPREF8578_0694	Terminase	NA
UHGV-1403766_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1403766_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1403766_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1403766_26	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1403766_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-1403766_27	UniRef90	UniRef90_A0A4D6B580	Portal (Connector) protein	NA
UHGV-1403766_27	eggNOG-mapper	1316408.HSISM1_1052	Phage portal protein	NA
UHGV-1403766_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1403766_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1403766_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1403766_27	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1403766_28	KOfam	K06904	NA	NA
UHGV-1403766_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1403766_28	UniRef90	UniRef90_A0A414CJ71	HK97 family phage prohead protease	NA
UHGV-1403766_28	eggNOG-mapper	1316408.HSISM1_1053	Caudovirus prohead serine protease	NA
UHGV-1403766_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1403766_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1403766_28	COG	COG3740	Phage head maturation protease	NA
UHGV-1403766_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1403766_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1403766_29	UniRef90	UniRef90_A0A4D6B1V9	Capsid protein	NA
UHGV-1403766_29	eggNOG-mapper	1316408.HSISM1_1054	capsid protein	NA
UHGV-1403766_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1403766_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1403766_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1403766_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1403766_30	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-1403766_30	UniRef90	UniRef90_A0A0P0N6K2	Phage transcriptional terminator	NA
UHGV-1403766_31	PHROG	phrog_2550	NA	unknown function
UHGV-1403766_31	UniRef90	UniRef90_T0U4H0	Orf46	NA
UHGV-1403766_31	eggNOG-mapper	644007.C5J965_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-1403766_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1403766_32	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1403766_32	UniRef90	UniRef90_A0A414CIH3	Phage head closure protein	NA
UHGV-1403766_32	eggNOG-mapper	1316408.HSISM1_1057	Phage head-tail joining protein	NA
UHGV-1403766_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1403766_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1403766_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1403766_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1403766_33	UniRef90	UniRef90_A0A414CIF4	HK97 gp10 family phage protein	NA
UHGV-1403766_33	eggNOG-mapper	1316408.HSISM1_1058	NA	NA
UHGV-1403766_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1403766_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1403766_34	PHROG	phrog_78	tail terminator	connector
UHGV-1403766_34	UniRef90	UniRef90_T0U477	Prophage pi2 protein 38	NA
UHGV-1403766_34	eggNOG-mapper	1316408.HSISM1_1241	NA	NA
UHGV-1403766_34	Structural annotation	PF20765	NA	NA
UHGV-1403766_35	PHROG	phrog_88	major tail protein	tail
UHGV-1403766_35	UniRef90	UniRef90_T0U4F0	Phage major tail protein	NA
UHGV-1403766_35	eggNOG-mapper	1316408.HSISM1_1242	phage major tail protein, phi13 family	NA
UHGV-1403766_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1403766_35	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1403766_36	PHROG	phrog_709	NA	unknown function
UHGV-1403766_36	UniRef90	UniRef90_A0A0E4CSV4	Prophage pi2 protein 40	NA
UHGV-1403766_36	eggNOG-mapper	1316408.HSISM1_1243	NA	NA
UHGV-1403766_36	Structural annotation	PF11836	NA	NA
UHGV-1403766_37	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1403766_37	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1403766_37	UniRef90	UniRef90_A0A1F0KCN3	Phage tail tape measure protein	NA
UHGV-1403766_37	eggNOG-mapper	1316408.HSISM1_1244	Phage tail tape measure protein	NA
UHGV-1403766_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1403766_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1403766_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1403766_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1403766_38	UniRef90	UniRef90_UPI001CC00BD7	phage tail protein	NA
UHGV-1403766_38	eggNOG-mapper	1316408.HSISM1_1245	NA	NA
UHGV-1403766_38	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1403766_39	PHROG	phrog_2189	tail protein	tail
UHGV-1403766_39	UniRef90	UniRef90_A0A1F0KA01	Gp58 domain-containing protein	NA
UHGV-1403766_39	eggNOG-mapper	1316408.HSISM1_1246	Phage minor structural protein	NA
UHGV-1403766_39	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1403766_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1403766_39	COG	COG1511	NA	NA