UHGV-1403841

Genome information

vOTU vOTU-019124

Genome length 25,046 bps

CDS count 28

Completeness 63.36% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-1403841
vOTU ID	vOTU-019124
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0182424
BioSample	SAMEA2338742
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.27
Jumbo phage	No

Genome content
Genome length	25,046 bps
GC content	34.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	95.37%
Average CDS length	856.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1403841_1	KOfam	K06904	NA	NA
UHGV-1403841_1	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1403841_1	UniRef90	UniRef90_UPI001C2D89D5	HK97 family phage prohead protease	NA
UHGV-1403841_1	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-1403841_1	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1403841_1	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1403841_1	COG	COG3740	Phage head maturation protease	NA
UHGV-1403841_1	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1403841_2	PHROG	phrog_12	portal protein	head and packaging
UHGV-1403841_2	UniRef90	UniRef90_UPI0005C7E1AD	phage portal protein	NA
UHGV-1403841_2	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-1403841_2	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1403841_2	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1403841_2	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1403841_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1403841_3	UniRef90	UniRef90_A0A6N4TPE2	Phage terminase large subunit	NA
UHGV-1403841_3	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-1403841_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1403841_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1403841_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1403841_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1403841_4	eggNOG-mapper	642492.Clole_1854	NA	NA
UHGV-1403841_5	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1403841_5	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-1403841_5	eggNOG-mapper	1157490.EL26_20750	HNH endonuclease	NA
UHGV-1403841_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1403841_5	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1403841_6	UniRef90	UniRef90_UPI001E3A7391	NA	NA
UHGV-1403841_6	eggNOG-mapper	1262449.CP6013_3212	NA	NA
UHGV-1403841_6	Structural annotation	PF07761	NA	NA
UHGV-1403841_8	PHROG	phrog_6616	tail protein	tail
UHGV-1403841_8	UniRef90	UniRef90_A0A6N4TMD0	Peptidase S74 domain-containing protein	NA
UHGV-1403841_8	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-1403841_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1403841_8	COG	COG4926	Phage-related protein	NA
UHGV-1403841_8	Structural annotation	PF05113, PF03944, NF033848, NF033675, COG3500	NA	NA
UHGV-1403841_9	PHROG	phrog_1194	NA	unknown function
UHGV-1403841_9	eggNOG-mapper	552396.HMPREF0863_01645	NA	NA
UHGV-1403841_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1403841_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1403841_10	UniRef90	UniRef90_A0A4R3TDI6	Phage-related protein	NA
UHGV-1403841_10	eggNOG-mapper	552396.HMPREF0863_01644	phage tail tape measure protein	NA
UHGV-1403841_10	COG	COG1511	NA	NA
UHGV-1403841_11	PHROG	phrog_8300	NA	unknown function
UHGV-1403841_11	eggNOG-mapper	1232449.BAHV02000018_gene1519	NA	NA
UHGV-1403841_11	Structural annotation	PF06896	NA	NA
UHGV-1403841_12	PHROG	phrog_820	major tail protein	tail
UHGV-1403841_12	UniRef90	UniRef90_U2PYP6	Big_5 domain-containing protein	NA
UHGV-1403841_12	eggNOG-mapper	552396.HMPREF0863_01641	domain, Protein	NA
UHGV-1403841_12	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1403841_12	COG	COG5492	NA	NA
UHGV-1403841_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1403841_13	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1403841_13	UniRef90	UniRef90_UPI001D0A149F	minor capsid protein	NA
UHGV-1403841_13	eggNOG-mapper	1232449.BAHV02000018_gene1521	NA	NA
UHGV-1403841_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1403841_13	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1403841_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1403841_14	UniRef90	UniRef90_UPI001D0A635A	minor capsid protein	NA
UHGV-1403841_14	eggNOG-mapper	552396.HMPREF0863_01639	NA	NA
UHGV-1403841_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1403841_15	PHROG	phrog_8710	NA	unknown function
UHGV-1403841_15	eggNOG-mapper	552396.HMPREF0863_01638	NA	NA
UHGV-1403841_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1403841_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1403841_16	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-1403841_17	PHROG	phrog_1378	NA	unknown function
UHGV-1403841_18	PHROG	phrog_422	major head protein	head and packaging
UHGV-1403841_18	UniRef90	UniRef90_UPI0009340F4E	capsid protein	NA
UHGV-1403841_18	eggNOG-mapper	1232449.BAHV02000018_gene1525	NA	NA
UHGV-1403841_18	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1403841_20	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1403841_20	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-1403841_20	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-1403841_20	Pfam	PF14359	NA	DUF4406
UHGV-1403841_20	Structural annotation	PF14359	NA	NA
UHGV-1403841_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1403841_22	UniRef90	UniRef90_UPI001D0B0D83	phage minor capsid protein	NA
UHGV-1403841_22	eggNOG-mapper	552396.HMPREF0863_01630	Phage minor capsid protein 2	NA
UHGV-1403841_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1403841_22	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-1403841_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-1403841_23	UniRef90	UniRef90_UPI001D09B198	phage portal protein	NA
UHGV-1403841_23	eggNOG-mapper	1232449.BAHV02000018_gene1530	NA	NA
UHGV-1403841_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1403841_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1403841_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1403841_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1403841_24	UniRef90	UniRef90_UPI000E50F161	terminase	NA
UHGV-1403841_24	eggNOG-mapper	1232449.BAHV02000018_gene1531	Phage terminase, large subunit, PBSX family	NA
UHGV-1403841_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1403841_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1403841_25	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-1403841_25	UniRef90	UniRef90_UPI001E5777F5	phage terminase small subunit	NA
UHGV-1403841_25	eggNOG-mapper	1232449.BAHV02000008_gene626	DNA packaging	NA
UHGV-1403841_25	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1403841_25	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-1403841_25	COG	COG5484	NA	NA
UHGV-1403841_25	Structural annotation	NF040601, COG5484	NA	NA