UHGV-1404073

Genome information

Genome length 28,576 bps

CDS count 50

Completeness 96.32% (high-quality)

geNomad score 0.9602

Prediction confidence Confident

Genome information
Genome ID	UHGV-1404073
vOTU ID	vOTU-067532
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0203398
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9602
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.25
Jumbo phage	No

Genome content
Genome length	28,576 bps
GC content	27.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.40%
Average CDS length	537.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1404073_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1404073_1	UniRef90	UniRef90_W9E7Y3	HNH endonuclease	NA
UHGV-1404073_1	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-1404073_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1404073_4	PHROG	phrog_709	NA	unknown function
UHGV-1404073_4	Structural annotation	PF11836	NA	NA
UHGV-1404073_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1404073_5	UniRef90	UniRef90_R6SME5	DNA-directed RNA polymerase specialized sigma subunit sigma24	NA
UHGV-1404073_5	eggNOG-mapper	318464.IO99_13795	DNA-templated transcription, initiation	NA
UHGV-1404073_5	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-1404073_5	Structural annotation	PF06530, TIGR01636, COG2739	NA	NA
UHGV-1404073_6	PHROG	phrog_8470	NA	unknown function
UHGV-1404073_6	UniRef90	UniRef90_UPI00165E2CD5	PcfJ domain-containing protein	NA
UHGV-1404073_6	eggNOG-mapper	1256908.HMPREF0373_02105	PcfJ-like protein	NA
UHGV-1404073_6	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1404073_6	Structural annotation	PF14284	NA	NA
UHGV-1404073_7	PHROG	phrog_7445	NA	unknown function
UHGV-1404073_7	eggNOG-mapper	1232449.BAHV02000018_gene1541	PcfK-like protein	NA
UHGV-1404073_7	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1404073_9	PHROG	phrog_18984	NA	unknown function
UHGV-1404073_9	eggNOG-mapper	742740.HMPREF9474_02296	NA	NA
UHGV-1404073_20	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1404073_20	PHROG	phrog_216	integrase	integration and excision
UHGV-1404073_20	UniRef90	UniRef90_R7ID34	Tyr recombinase domain-containing protein	NA
UHGV-1404073_20	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-1404073_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1404073_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1404073_20	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1404073_21	UniRef90	UniRef90_A0A7X6P6Q9	DNA gyrase	NA
UHGV-1404073_21	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-1404073_21	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-1404073_22	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1404073_22	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1404073_22	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1404073_22	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1404073_25	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-1404073_25	eggNOG-mapper	1236508.BAKF01000001_gene163	transcriptional regulator	NA
UHGV-1404073_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1404073_25	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1404073_25	Structural annotation	PF12844, NF041677, COG1396	NA	NA
UHGV-1404073_26	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1404073_26	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1404073_26	UniRef90	UniRef90_A0A542AKA2	Repressor LexA	NA
UHGV-1404073_26	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-1404073_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1404073_26	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1404073_26	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1404073_26	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1404073_27	Pfam	PF08792	A2L zinc ribbon domain	A2L_zn_ribbon
UHGV-1404073_27	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-1404073_28	KOfam	K14059	int; integrase	NA
UHGV-1404073_28	PHROG	phrog_1	integrase	integration and excision
UHGV-1404073_28	UniRef90	UniRef90_R7IG47	Putative phage integrase	NA
UHGV-1404073_28	eggNOG-mapper	1443125.Z962_07700	Belongs to the 'phage' integrase family	NA
UHGV-1404073_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1404073_28	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1404073_28	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1404073_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1404073_29	PHROG	phrog_7698	endolysin	lysis
UHGV-1404073_29	UniRef90	UniRef90_A0A3C1LWK8	SPOR domain-containing protein	NA
UHGV-1404073_29	eggNOG-mapper	1123315.AUIP01000001_gene1438	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-1404073_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1404073_29	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1404073_29	Pfam	PF01476	LysM domain	LysM
UHGV-1404073_29	COG	COG1388	LysM repeat	NA
UHGV-1404073_32	PHROG	phrog_689	holin	lysis
UHGV-1404073_32	UniRef90	UniRef90_A0A2X2Y6S8	NA	NA
UHGV-1404073_32	eggNOG-mapper	1230342.CTM_01534	Haemolysin XhlA	NA
UHGV-1404073_32	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-1404073_35	PHROG	phrog_24267	NA	unknown function
UHGV-1404073_35	UniRef90	UniRef90_R5LJS3	Phage structural protein	NA
UHGV-1404073_35	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1404073_35	COG	COG4675	Phage tail collar domain	NA
UHGV-1404073_35	Structural annotation	COG4675	NA	NA
UHGV-1404073_38	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1404073_38	UniRef90	UniRef90_UPI0006925FC0	phage tail protein	NA
UHGV-1404073_38	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-1404073_38	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1404073_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1404073_38	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1404073_38	COG	COG4926	Phage-related protein	NA
UHGV-1404073_38	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1404073_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1404073_39	UniRef90	UniRef90_A0A1M6EV13	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-1404073_39	eggNOG-mapper	536233.CLO_1433	tail component	NA
UHGV-1404073_39	COG	COG4722	Phage-related protein YomH	NA
UHGV-1404073_39	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1404073_40	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1404073_40	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-1404073_40	COG	COG1511	NA	NA
UHGV-1404073_40	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-1404073_41	PHROG	phrog_88	major tail protein	tail
UHGV-1404073_41	UniRef90	UniRef90_A0A1E8RGF9	Phage tail protein	NA
UHGV-1404073_41	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-1404073_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1404073_41	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1404073_42	PHROG	phrog_78	tail terminator	connector
UHGV-1404073_42	UniRef90	UniRef90_A0A0Z8KW16	Prophage pi2 protein 38	NA
UHGV-1404073_42	eggNOG-mapper	759913.SDSE_1372	NA	NA
UHGV-1404073_42	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-1404073_43	UniRef90	UniRef90_A0A843HQ28	HK97 gp10 family phage protein	NA
UHGV-1404073_43	eggNOG-mapper	1121871.AUAT01000030_gene1030	NA	NA
UHGV-1404073_43	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1404073_44	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1404073_44	UniRef90	UniRef90_UPI001F08F7B1	phage head closure protein	NA
UHGV-1404073_44	eggNOG-mapper	573061.Clocel_2434	head-tail adaptor	NA
UHGV-1404073_44	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1404073_44	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1404073_44	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1404073_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1404073_45	PHROG	phrog_5223	neck protein	connector
UHGV-1404073_45	eggNOG-mapper	931276.Cspa_c10180	NA	NA
UHGV-1404073_45	Structural annotation	TIGR01560	NA	NA
UHGV-1404073_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-1404073_46	UniRef90	UniRef90_A0A843HUX6	Phage major capsid protein	NA
UHGV-1404073_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1404073_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1404073_46	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1404073_47	KOfam	K06904	NA	NA
UHGV-1404073_47	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1404073_47	UniRef90	UniRef90_V9H369	HK97 family phage prohead protease	NA
UHGV-1404073_47	eggNOG-mapper	457396.CSBG_01048	Phage prohead protease, HK97 family	NA
UHGV-1404073_47	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1404073_47	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1404073_47	COG	COG3740	Phage head maturation protease	NA
UHGV-1404073_47	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1404073_48	PHROG	phrog_12	portal protein	head and packaging
UHGV-1404073_48	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-1404073_48	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-1404073_48	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1404073_48	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1404073_48	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1404073_49	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1404073_49	UniRef90	UniRef90_UPI001CFF08E1	terminase large subunit	NA
UHGV-1404073_49	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-1404073_49	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1404073_49	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1404073_49	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1404073_49	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1404073_50	PHROG	phrog_1066	NA	unknown function
UHGV-1404073_50	UniRef90	UniRef90_W0U724	Phage terminase-like protein, small subunit	NA
UHGV-1404073_50	eggNOG-mapper	1160721.RBI_I01586	NA	NA
UHGV-1404073_50	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA