UHGV-1404392

Genome information

Genome length 27,223 bps

CDS count 35

Completeness 77.03% (medium-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-1404392
vOTU ID	vOTU-034416
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0195768
BioSample	SAMEA2737897
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.55
Jumbo phage	No

Genome content
Genome length	27,223 bps
GC content	65.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	94.31%
Average CDS length	735.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1404392_2	KOfam	K01126	E3.1.4.46, glpQ, ugpQ; glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46]	NA
UHGV-1404392_2	PHROG	phrog_17803	phosphodiesterase	other
UHGV-1404392_2	UniRef90	UniRef90_A0A1S1ELK3	GP-PDE domain-containing protein	NA
UHGV-1404392_2	eggNOG-mapper	888052.HMPREF9006_0953	glycerophosphoryl diester phosphodiesterase	NA
UHGV-1404392_2	Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	GDPD
UHGV-1404392_2	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-1404392_2	Structural annotation	PF03009, MF_02227, NF006989, COG0584	NA	NA
UHGV-1404392_3	PHROG	phrog_30808	NA	unknown function
UHGV-1404392_3	UniRef90	UniRef90_A0A7U0HMP2	Collagen-like protein	NA
UHGV-1404392_4	PHROG	phrog_28842	NA	unknown function
UHGV-1404392_4	Structural annotation	PF08400, TIGR04134, COG3126	NA	NA
UHGV-1404392_5	PHROG	phrog_15808	NA	unknown function
UHGV-1404392_5	UniRef90	UniRef90_Z4X4B6	PF10874 family protein	NA
UHGV-1404392_6	eggNOG-mapper	883077.HMPREF9241_01713	NA	NA
UHGV-1404392_7	PHROG	phrog_21825	endolysin	lysis
UHGV-1404392_7	UniRef90	UniRef90_UPI001C68242F	CHAP domain-containing protein	NA
UHGV-1404392_7	eggNOG-mapper	883077.HMPREF9241_01712	CHAP domain	NA
UHGV-1404392_7	Pfam	PF05257	CHAP domain	CHAP
UHGV-1404392_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1404392_7	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-1404392_9	PHROG	phrog_31345	NA	unknown function
UHGV-1404392_9	Structural annotation	PF15868, NF012201	NA	NA
UHGV-1404392_10	PHROG	phrog_32674	NA	unknown function
UHGV-1404392_10	Structural annotation	PF17758, MF_00075, NF003082, COG0361	NA	NA
UHGV-1404392_11	PHROG	phrog_1887	tail protein	tail
UHGV-1404392_11	UniRef90	UniRef90_X6PXW6	Putative phage tail protein	NA
UHGV-1404392_11	eggNOG-mapper	525246.HMPREF0058_1253	NA	NA
UHGV-1404392_11	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1404392_12	PHROG	phrog_30446	NA	unknown function
UHGV-1404392_12	Structural annotation	PF00629, PF06995, NF033675, TIGR01633, COG3499	NA	NA
UHGV-1404392_13	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1404392_13	PHROG	phrog_971	endolysin	lysis
UHGV-1404392_13	UniRef90	UniRef90_A0A1S1ELJ1	NlpC/P60 domain-containing protein	NA
UHGV-1404392_13	eggNOG-mapper	1680.BADO_1579	phage tail tape measure protein	NA
UHGV-1404392_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1404392_13	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1404392_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1404392_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1404392_13	Structural annotation	PF20155, NF033742, COG3941	NA	NA
UHGV-1404392_15	PHROG	phrog_24495	NA	unknown function
UHGV-1404392_17	PHROG	phrog_476	major tail protein	tail
UHGV-1404392_17	UniRef90	UniRef90_A0A1L7R9W6	Major tail protein	NA
UHGV-1404392_17	eggNOG-mapper	525246.HMPREF0058_1249	NA	NA
UHGV-1404392_17	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1404392_18	PHROG	phrog_37847	NA	unknown function
UHGV-1404392_18	Structural annotation	PF06141, NF040576, COG3167	NA	NA
UHGV-1404392_19	PHROG	phrog_16886	NA	unknown function
UHGV-1404392_19	UniRef90	UniRef90_UPI001552BA5E	HK97 gp10 family phage protein	NA
UHGV-1404392_19	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1404392_20	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1404392_21	PHROG	phrog_2377	head-tail adaptor Ad1	connector
UHGV-1404392_21	UniRef90	UniRef90_W5TUL8	Putative bacteriophage protein	NA
UHGV-1404392_21	Structural annotation	TIGR02215	NA	NA
UHGV-1404392_23	PHROG	phrog_267	major head protein	head and packaging
UHGV-1404392_23	UniRef90	UniRef90_A0A543I5J5	P22 coat protein Gp5	NA
UHGV-1404392_23	eggNOG-mapper	1381751.JAJB01000050_gene145	P22 coat protein-protein 5 domain protein	NA
UHGV-1404392_23	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-1404392_23	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1404392_24	PHROG	phrog_2592	head scaffolding protein	head and packaging
UHGV-1404392_24	UniRef90	UniRef90_W5TNY3	Putative bacteriophage protein	NA
UHGV-1404392_24	eggNOG-mapper	1415166.NONO_c60730	NA	NA
UHGV-1404392_25	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1404392_25	UniRef90	UniRef90_A0A1S1EK40	CdiA_C domain-containing protein	NA
UHGV-1404392_25	eggNOG-mapper	591157.SSLG_02646	NA	NA
UHGV-1404392_25	Structural annotation	PF18451	NA	NA
UHGV-1404392_26	PHROG	phrog_104	portal protein	head and packaging
UHGV-1404392_26	UniRef90	UniRef90_UPI001C66A0B7	phage portal protein	NA
UHGV-1404392_26	eggNOG-mapper	1415166.NONO_c60710	NA	NA
UHGV-1404392_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1404392_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1404392_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1404392_27	UniRef90	UniRef90_A0A430JUG0	Terminase	NA
UHGV-1404392_27	eggNOG-mapper	591157.SSLG_02648	Terminase	NA
UHGV-1404392_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1404392_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1404392_28	PHROG	phrog_226	minor tail protein	tail
UHGV-1404392_28	UniRef90	UniRef90_A0A0U1D3K1	Bacteriophage protein	NA
UHGV-1404392_28	eggNOG-mapper	1287475.HMPREF1650_04200	NA	NA
UHGV-1404392_29	PHROG	phrog_8643	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-1404392_29	UniRef90	UniRef90_A0A2W4J7S9	DNA primase	NA
UHGV-1404392_29	eggNOG-mapper	1352941.M877_28815	Phage plasmid primase, P4 family domain protein	NA
UHGV-1404392_29	COG	COG4983	Primase-polymerase (Primpol) domain protein	NA
UHGV-1404392_29	Structural annotation	PF09250	NA	NA
UHGV-1404392_31	PHROG	phrog_1467	NA	unknown function
UHGV-1404392_31	eggNOG-mapper	525246.HMPREF0058_1236	NA	NA
UHGV-1404392_32	PHROG	phrog_15463	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1404392_32	UniRef90	UniRef90_A0A1S1EPJ6	HNHc domain-containing protein	NA
UHGV-1404392_32	eggNOG-mapper	1429046.RR21198_3140	endonuclease activity	NA
UHGV-1404392_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1404392_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1404392_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1404392_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1404392_35	UniRef90	UniRef90_UPI001C665E61	single-stranded DNA-binding protein	NA
UHGV-1404392_35	eggNOG-mapper	888052.HMPREF9006_1337	Single-stranded DNA-binding protein	NA
UHGV-1404392_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1404392_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1404392_35	COG	COG0629	Single-stranded DNA-binding protein	NA