UHGV-1404667

Genome information

Genome length 24,980 bps

CDS count 33

Completeness 55.12% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-1404667
vOTU ID	vOTU-024970
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0182020
BioSample	SAMEA2338839
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.3
Jumbo phage	No

Genome content
Genome length	24,980 bps
GC content	41.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	90.70%
Average CDS length	690.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1404667_1	PHROG	phrog_533	portal protein	head and packaging
UHGV-1404667_1	UniRef90	UniRef90_A0A173R9C0	Phage portal protein, putative, A118 family	NA
UHGV-1404667_1	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-1404667_1	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1404667_2	PHROG	phrog_1129	holin	lysis
UHGV-1404667_2	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-1404667_2	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-1404667_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1404667_2	Structural annotation	PF16079	NA	NA
UHGV-1404667_3	PHROG	phrog_774	NA	unknown function
UHGV-1404667_3	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1404667_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1404667_4	UniRef90	UniRef90_A0A373MXM0	Phage capsid protein	NA
UHGV-1404667_4	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-1404667_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1404667_4	COG	COG2369	NA	NA
UHGV-1404667_4	Structural annotation	PF06152	NA	NA
UHGV-1404667_6	PHROG	phrog_3754	NA	unknown function
UHGV-1404667_6	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1404667_8	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-1404667_8	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-1404667_9	PHROG	phrog_21718	NA	unknown function
UHGV-1404667_9	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1404667_10	PHROG	phrog_22984	NA	unknown function
UHGV-1404667_11	PHROG	phrog_16490	NA	unknown function
UHGV-1404667_11	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-1404667_12	PHROG	phrog_20016	NA	unknown function
UHGV-1404667_12	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-1404667_12	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1404667_12	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1404667_13	PHROG	phrog_28802	NA	unknown function
UHGV-1404667_13	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1404667_14	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1404667_14	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-1404667_14	UniRef90	UniRef90_A0A396PTY1	Methyltransferase	NA
UHGV-1404667_14	eggNOG-mapper	888049.HMPREF8578_0680	DNA methylase	NA
UHGV-1404667_14	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1404667_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1404667_14	COG	COG0863	DNA modification methylase	NA
UHGV-1404667_14	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1404667_15	UniRef90	UniRef90_UPI001D15D4B7	cysteine-rich KTR domain-containing protein	NA
UHGV-1404667_15	eggNOG-mapper	476272.RUMHYD_01773	Cysteine-rich KTR	NA
UHGV-1404667_15	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-1404667_15	Structural annotation	PF14205, NF041070	NA	NA
UHGV-1404667_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1404667_16	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-1404667_16	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-1404667_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1404667_16	Structural annotation	PF06810	NA	NA
UHGV-1404667_17	PHROG	phrog_544	major head protein	head and packaging
UHGV-1404667_17	UniRef90	UniRef90_A0A173R8P5	S-l_SbsC_C domain-containing protein	NA
UHGV-1404667_17	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-1404667_17	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1404667_17	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1404667_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1404667_18	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-1404667_19	PHROG	phrog_3366	NA	unknown function
UHGV-1404667_19	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-1404667_19	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1404667_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1404667_20	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-1404667_20	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1404667_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1404667_20	Structural annotation	PF11114	NA	NA
UHGV-1404667_21	PHROG	phrog_3266	tail completion	connector
UHGV-1404667_21	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-1404667_21	Structural annotation	PF12691	NA	NA
UHGV-1404667_22	PHROG	phrog_3099	NA	unknown function
UHGV-1404667_22	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-1404667_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1404667_23	PHROG	phrog_11299	NA	unknown function
UHGV-1404667_23	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-1404667_23	Structural annotation	PF10666	NA	NA
UHGV-1404667_24	PHROG	phrog_706	NA	unknown function
UHGV-1404667_24	UniRef90	UniRef90_UPI00156F9D1C	Gp15 family bacteriophage protein	NA
UHGV-1404667_24	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-1404667_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1404667_24	Structural annotation	PF06854	NA	NA
UHGV-1404667_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1404667_25	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-1404667_25	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-1404667_25	COG	COG5412	Phage-related protein	NA
UHGV-1404667_26	PHROG	phrog_1194	NA	unknown function
UHGV-1404667_26	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1404667_27	PHROG	phrog_6616	tail protein	tail
UHGV-1404667_27	UniRef90	UniRef90_UPI0015714EA8	tail fiber domain-containing protein	NA
UHGV-1404667_27	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-1404667_27	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1404667_27	COG	COG4926	Phage-related protein	NA
UHGV-1404667_27	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-1404667_28	UniRef90	UniRef90_A0A7X3MEX5	H_lectin domain-containing protein	NA
UHGV-1404667_30	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-1404667_30	PHROG	phrog_1	integrase	integration and excision
UHGV-1404667_30	UniRef90	UniRef90_UPI0011DD7E30	tyrosine-type recombinase/integrase	NA
UHGV-1404667_30	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1404667_30	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1404667_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1404667_30	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1404667_30	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1404667_32	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA