UHGV-1404702

Genome information

Genome length 28,398 bps

CDS count 52

Completeness 63.22% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-1404702
vOTU ID	vOTU-034422
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0202384
BioSample	SAMEA3136685
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.9
Jumbo phage	No

Genome content
Genome length	28,398 bps
GC content	36.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.86%
Average CDS length	523.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1404702_1	PHROG	phrog_400	tail protein	tail
UHGV-1404702_1	UniRef90	UniRef90_A0A7X8GG27	Hydrolase (Fragment)	NA
UHGV-1404702_1	eggNOG-mapper	1029718.SFBM_0133	PFAM Phage late control gene D protein (GPD)	NA
UHGV-1404702_1	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-1404702_1	Structural annotation	PF21683, MF_01370	NA	NA
UHGV-1404702_2	PHROG	phrog_380	endolysin	lysis
UHGV-1404702_2	UniRef90	UniRef90_UPI0018AC25C4	hydrolase	NA
UHGV-1404702_2	eggNOG-mapper	1029718.SFBM_0132	LysM domain	NA
UHGV-1404702_2	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-1404702_2	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-1404702_3	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1404702_3	UniRef90	UniRef90_A0A415TAJ0	TMP_3 domain-containing protein	NA
UHGV-1404702_3	eggNOG-mapper	1029718.SFBM_0131	tape measure	NA
UHGV-1404702_3	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1404702_3	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1404702_3	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1404702_3	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1404702_4	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1404702_4	UniRef90	UniRef90_A9KPN9	XkdN-like protein	NA
UHGV-1404702_4	eggNOG-mapper	357809.Cphy_2956	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-1404702_4	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1404702_4	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1404702_5	PHROG	phrog_365	tail protein	tail
UHGV-1404702_5	UniRef90	UniRef90_UPI000C84C279	phage tail tube protein	NA
UHGV-1404702_5	eggNOG-mapper	357809.Cphy_2957	Phage tail tube protein	NA
UHGV-1404702_5	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1404702_5	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1404702_6	PHROG	phrog_279	tail sheath	tail
UHGV-1404702_6	UniRef90	UniRef90_A0A415TAL3	Phage tail protein	NA
UHGV-1404702_6	eggNOG-mapper	1029718.SFBM_0128	Phage tail sheath protein beta-sandwich domain	NA
UHGV-1404702_6	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1404702_6	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1404702_6	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1404702_6	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1404702_7	PHROG	phrog_966	NA	unknown function
UHGV-1404702_7	eggNOG-mapper	357809.Cphy_2959	NA	NA
UHGV-1404702_8	PHROG	phrog_525	NA	unknown function
UHGV-1404702_8	UniRef90	UniRef90_A9KQ05	NA	NA
UHGV-1404702_8	eggNOG-mapper	357809.Cphy_2960	NA	NA
UHGV-1404702_8	Pfam	PF20765	NA	DUF6838
UHGV-1404702_8	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1404702_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1404702_9	UniRef90	UniRef90_A0A415TAD4	HK97 gp10 family phage protein	NA
UHGV-1404702_9	eggNOG-mapper	357809.Cphy_2961	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1404702_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1404702_9	Structural annotation	PF04883, COG5005	NA	NA
UHGV-1404702_10	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1404702_10	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-1404702_10	eggNOG-mapper	1029718.SFBM_0124	NA	NA
UHGV-1404702_10	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1404702_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1404702_11	eggNOG-mapper	1095750.HMPREF9970_0285	NA	NA
UHGV-1404702_11	Structural annotation	PF05135	NA	NA
UHGV-1404702_12	PHROG	phrog_247	major head protein	head and packaging
UHGV-1404702_12	UniRef90	UniRef90_A0A415TAB6	Phage coat protein	NA
UHGV-1404702_12	eggNOG-mapper	1029718.SFBM_0122	NA	NA
UHGV-1404702_12	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-1404702_12	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1404702_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1404702_13	UniRef90	UniRef90_UPI000DE48932	phage scaffolding protein	NA
UHGV-1404702_13	eggNOG-mapper	1095750.HMPREF9970_1035	Phage minor structural protein GP20	NA
UHGV-1404702_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1404702_13	Structural annotation	PF06810	NA	NA
UHGV-1404702_14	Structural annotation	PF20124	NA	NA
UHGV-1404702_16	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1404702_16	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-1404702_16	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-1404702_16	Structural annotation	PF14359	NA	NA
UHGV-1404702_17	PHROG	phrog_27009	NA	unknown function
UHGV-1404702_18	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1404702_18	UniRef90	UniRef90_UPI001D05E658	minor capsid protein	NA
UHGV-1404702_18	eggNOG-mapper	1029718.SFBM_0117	Phage Mu protein F like protein	NA
UHGV-1404702_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1404702_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1404702_18	COG	COG2369	NA	NA
UHGV-1404702_18	Structural annotation	PF15542, PF04233, TIGR01641, COG2369	NA	NA
UHGV-1404702_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-1404702_19	UniRef90	UniRef90_UPI001D05D7B4	phage portal protein	NA
UHGV-1404702_19	eggNOG-mapper	1029718.SFBM_0116	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1404702_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1404702_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1404702_20	PHROG	phrog_1233	NA	unknown function
UHGV-1404702_20	UniRef90	UniRef90_UPI001D077F84	basic secretory family protein	NA
UHGV-1404702_20	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-1404702_21	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-1404702_21	UniRef90	UniRef90_UPI001D07D700	phage terminase large subunit	NA
UHGV-1404702_21	eggNOG-mapper	742740.HMPREF9474_02358	TIGRFAM Phage	NA
UHGV-1404702_21	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1404702_21	COG	COG5410	NA	NA
UHGV-1404702_21	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1404702_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1404702_22	UniRef90	UniRef90_UPI001D0950BA	helix-turn-helix domain-containing protein	NA
UHGV-1404702_22	eggNOG-mapper	742740.HMPREF9474_02359	transposase activity	NA
UHGV-1404702_22	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1404702_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1404702_22	Structural annotation	PF07141	NA	NA
UHGV-1404702_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1404702_23	UniRef90	UniRef90_A0A415TAG9	NA	NA
UHGV-1404702_23	eggNOG-mapper	742740.HMPREF9474_02360	NA	NA
UHGV-1404702_23	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-1404702_25	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-1404702_25	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-1404702_25	UniRef90	UniRef90_A0A7W3SX10	HD superfamily phosphohydrolase YqeK	NA
UHGV-1404702_25	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-1404702_25	Pfam	PF01966	HD domain	HD
UHGV-1404702_25	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-1404702_25	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-1404702_29	PHROG	phrog_6568	NA	unknown function
UHGV-1404702_29	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-1404702_30	PHROG	phrog_16126	NA	unknown function
UHGV-1404702_30	eggNOG-mapper	665950.HMPREF1025_01978	NA	NA
UHGV-1404702_31	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1404702_31	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1404702_31	UniRef90	UniRef90_A0A415TAQ6	FAD-dependent thymidylate synthase	NA
UHGV-1404702_31	eggNOG-mapper	509191.AEDB02000067_gene837	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-1404702_31	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1404702_31	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-1404702_31	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1404702_31	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1404702_32	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1404702_32	UniRef90	UniRef90_A0A415TAK8	NA	NA
UHGV-1404702_32	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-1404702_32	Pfam	PF11753	NA	DUF3310
UHGV-1404702_32	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1404702_34	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1404702_35	PHROG	phrog_6721	NA	unknown function
UHGV-1404702_35	eggNOG-mapper	665956.HMPREF1032_00655	NA	NA
UHGV-1404702_35	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1404702_36	PHROG	phrog_7566	NA	unknown function
UHGV-1404702_37	PHROG	phrog_9804	NA	unknown function
UHGV-1404702_37	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-1404702_37	eggNOG-mapper	626523.GCWU000342_01038	Loader and inhibitor of phage G40P	NA
UHGV-1404702_37	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1404702_37	Structural annotation	PF11417	NA	NA
UHGV-1404702_38	PHROG	phrog_236	nucleotide kinase	other
UHGV-1404702_38	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-1404702_38	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-1404702_38	Pfam	PF11753	NA	DUF3310
UHGV-1404702_39	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1404702_39	UniRef90	UniRef90_U3PDU2	Putative DNA replication protein	NA
UHGV-1404702_39	eggNOG-mapper	1399942.U3PDU2_9CAUD	calcium ion binding	NA
UHGV-1404702_39	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-1404702_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1404702_40	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1404702_40	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-1404702_40	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1404702_40	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1404702_40	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1404702_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1404702_41	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-1404702_41	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1404702_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1404702_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1404702_42	UniRef90	UniRef90_A0A1C5QNW6	Single-stranded DNA-binding protein	NA
UHGV-1404702_42	eggNOG-mapper	1280688.AUJB01000009_gene1658	Single-strand binding protein family	NA
UHGV-1404702_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1404702_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1404702_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1404702_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1404702_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1404702_43	PHROG	phrog_7024	NA	unknown function
UHGV-1404702_44	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1404702_44	UniRef90	UniRef90_A0A3D5XTJ3	Cas_Cas4 domain-containing protein	NA
UHGV-1404702_44	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-1404702_44	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1404702_45	PHROG	phrog_6244	NA	unknown function
UHGV-1404702_45	eggNOG-mapper	508419.F8J183_9CAUD	NA	NA
UHGV-1404702_45	Structural annotation	PF05565	NA	NA
UHGV-1404702_47	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1404702_47	UniRef90	UniRef90_UPI001B0DFF6D	ERF family protein	NA
UHGV-1404702_47	eggNOG-mapper	1139219.I569_01405	ERF superfamily	NA
UHGV-1404702_47	Pfam	PF04404	ERF superfamily	ERF
UHGV-1404702_47	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-1404702_51	PHROG	phrog_14105	NA	unknown function
UHGV-1404702_51	UniRef90	UniRef90_A0A373VVH4	PPE family protein	NA
UHGV-1404702_51	eggNOG-mapper	97138.C820_00368	PPE family	NA
UHGV-1404702_51	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-1404702_51	COG	COG5651	PPE-repeat protein	NA