UHGV-1404774

Genome information

vOTU vOTU-020249

Genome length 28,591 bps

CDS count 30

Completeness 59.96% (medium-quality)

geNomad score 0.9677

Prediction confidence Confident

Genome information
Genome ID	UHGV-1404774
vOTU ID	vOTU-020249
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0203470
BioSample	SAMN00037012
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9677
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.65
Jumbo phage	No

Genome content
Genome length	28,591 bps
GC content	43.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	86.81%
Average CDS length	828.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1404774_2	PHROG	phrog_6721	NA	unknown function
UHGV-1404774_2	eggNOG-mapper	1121342.AUCO01000028_gene1278	NA	NA
UHGV-1404774_2	Structural annotation	MF_01408, TIGR02170	NA	NA
UHGV-1404774_4	eggNOG-mapper	1316408.HSISM1_2152	Peptidase S24-like protein	NA
UHGV-1404774_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1404774_4	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1404774_5	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1404774_5	UniRef90	UniRef90_A0A1I1GLF1	Putative DNA primase/helicase	NA
UHGV-1404774_5	eggNOG-mapper	1408323.JQKK01000012_gene961	Phage plasmid primase, P4 family domain protein	NA
UHGV-1404774_5	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-1404774_5	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-1404774_5	Pfam	PF19263	NA	DUF5906
UHGV-1404774_5	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1404774_5	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1404774_5	Structural annotation	PF05272, PF09250, PF08708, MF_00016, NF011296, COG5545	NA	NA
UHGV-1404774_6	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1404774_6	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1404774_6	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1404774_6	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1404774_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1404774_6	Structural annotation	PF07638, MF_00959, TIGR02859, COG1191	NA	NA
UHGV-1404774_8	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1404774_8	UniRef90	UniRef90_A0A318EMC2	DNA-packaging protein gp3	NA
UHGV-1404774_8	eggNOG-mapper	1280663.ATVR01000009_gene2143	NA	NA
UHGV-1404774_8	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1404774_9	Structural annotation	PF02768, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1404774_10	UniRef90	UniRef90_UPI0018991BC6	antirestriction protein ArdA	NA
UHGV-1404774_10	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-1404774_11	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-1404774_11	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-1404774_11	UniRef90	UniRef90_UPI00086843E1	ParM/StbA family protein	NA
UHGV-1404774_11	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-1404774_11	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-1404774_13	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-1404774_13	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-1404774_13	UniRef90	UniRef90_UPI001F45AC9C	NA	NA
UHGV-1404774_13	eggNOG-mapper	278197.PEPE_1194	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-1404774_13	PADLOC	SspH_00004	SspH	SSP
UHGV-1404774_13	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-1404774_13	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-1404774_13	Structural annotation	PF01580, PF17854, MF_00348, NF041214, COG0433	NA	NA
UHGV-1404774_14	PHROG	phrog_9996	NA	unknown function
UHGV-1404774_14	Structural annotation	PF18954, NF041423	NA	NA
UHGV-1404774_15	KOfam	K07448	mrr; restriction system protein	NA
UHGV-1404774_15	PHROG	phrog_19856	NA	unknown function
UHGV-1404774_15	UniRef90	UniRef90_A0A150C864	Restriction endonuclease	NA
UHGV-1404774_15	eggNOG-mapper	574375.BAGA_08480	restriction endonuclease	NA
UHGV-1404774_15	PADLOC	mREase_IV_00003	Type IV methyl-directed restriction enzyme	RM
UHGV-1404774_15	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1404774_15	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-1404774_16	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1404774_16	PHROG	phrog_366	tail fiber protein	tail
UHGV-1404774_16	eggNOG-mapper	545697.HMPREF0216_02867	domain, Protein	NA
UHGV-1404774_16	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1404774_16	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1404774_16	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1404774_16	Structural annotation	PF10651, PF01105	NA	NA
UHGV-1404774_17	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1404774_17	UniRef90	UniRef90_UPI001D063AE7	phage terminase large subunit	NA
UHGV-1404774_17	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-1404774_17	COG	COG5410	NA	NA
UHGV-1404774_17	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1404774_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-1404774_18	UniRef90	UniRef90_UPI001BAB50B9	phage portal protein	NA
UHGV-1404774_18	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1404774_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1404774_18	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1404774_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1404774_20	PHROG	phrog_1328	major head protein	head and packaging
UHGV-1404774_20	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-1404774_20	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-1404774_20	Pfam	PF17236	NA	DUF5309
UHGV-1404774_20	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-1404774_21	UniRef90	UniRef90_A0A3D2JMI1	DNA-packaging protein	NA
UHGV-1404774_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1404774_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1404774_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1404774_23	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1404774_24	Structural annotation	PF05657	NA	NA
UHGV-1404774_25	UniRef90	UniRef90_UPI00178A3505	phage tail protein	NA
UHGV-1404774_25	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-1404774_25	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1404774_26	Pfam	PF16478	NA	DUF5055
UHGV-1404774_26	Structural annotation	PF16478	NA	NA
UHGV-1404774_28	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1404774_28	UniRef90	UniRef90_A0A1C6I104	Phage-related protein	NA
UHGV-1404774_28	eggNOG-mapper	1499683.CCFF01000017_gene2923	phage tail tape measure protein	NA
UHGV-1404774_28	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1404774_29	PHROG	phrog_1194	NA	unknown function
UHGV-1404774_29	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-1404774_29	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-1404774_29	Pfam	PF20458	NA	DUF6711
UHGV-1404774_29	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1404774_30	PHROG	phrog_6616	tail protein	tail
UHGV-1404774_30	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-1404774_30	COG	COG4926	Phage-related protein	NA