UHGV-1404846

Genome information

vOTU vOTU-020738

Genome length 26,131 bps

CDS count 41

Completeness 64.07% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-1404846
vOTU ID	vOTU-020738
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0189267
BioSample	SAMN02674694
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.25
Jumbo phage	No

Genome content
Genome length	26,131 bps
GC content	48.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	87.80%
Average CDS length	564.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1404846_4	eggNOG-mapper	411902.CLOBOL_05434	NA	NA
UHGV-1404846_5	UniRef90	UniRef90_UPI001185EF0C	NA	NA
UHGV-1404846_5	eggNOG-mapper	742735.HMPREF9467_00186	NA	NA
UHGV-1404846_6	KOfam	K11060	entB; probable enterotoxin B	NA
UHGV-1404846_6	UniRef90	UniRef90_UPI001D068B5A	C40 family peptidase	NA
UHGV-1404846_6	eggNOG-mapper	411902.CLOBOL_00116	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-1404846_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1404846_6	Structural annotation	PF19127, PF00877, NF033742, COG0791	NA	NA
UHGV-1404846_8	PHROG	phrog_443	holin	lysis
UHGV-1404846_8	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-1404846_8	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-1404846_8	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1404846_8	Structural annotation	PF16945	NA	NA
UHGV-1404846_9	PHROG	phrog_1193	hemolysin	other
UHGV-1404846_9	UniRef90	UniRef90_UPI0017834AC0	hemolysin XhlA family protein	NA
UHGV-1404846_9	eggNOG-mapper	318464.IO99_03750	Haemolysin XhlA	NA
UHGV-1404846_9	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-1404846_11	eggNOG-mapper	411902.CLOBOL_00121	nuclear chromosome segregation	NA
UHGV-1404846_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1404846_11	Structural annotation	PF17994, MF_00813, NF038128, COG5156	NA	NA
UHGV-1404846_13	eggNOG-mapper	742733.HMPREF9469_00968	NA	NA
UHGV-1404846_15	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-1404846_16	PHROG	phrog_18725	NA	unknown function
UHGV-1404846_16	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-1404846_17	PHROG	phrog_13879	NA	unknown function
UHGV-1404846_17	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-1404846_17	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1404846_18	PHROG	phrog_1194	NA	unknown function
UHGV-1404846_18	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-1404846_18	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1404846_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1404846_19	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-1404846_19	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-1404846_19	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1404846_19	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1404846_20	UniRef90	UniRef90_A0A414ASC6	Com family DNA-binding transcriptional regulator	NA
UHGV-1404846_20	eggNOG-mapper	536233.CLO_1576	Mu-like prophage protein Com	NA
UHGV-1404846_20	Pfam	PF10122	NA	Mu-like_Com
UHGV-1404846_21	PHROG	phrog_8355	NA	unknown function
UHGV-1404846_21	UniRef90	UniRef90_UPI001D07612A	bacteriophage Gp15 family protein	NA
UHGV-1404846_21	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-1404846_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1404846_21	Structural annotation	PF06854	NA	NA
UHGV-1404846_22	PHROG	phrog_8300	NA	unknown function
UHGV-1404846_22	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-1404846_22	Structural annotation	PF06854	NA	NA
UHGV-1404846_23	PHROG	phrog_820	major tail protein	tail
UHGV-1404846_23	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-1404846_23	COG	COG5492	NA	NA
UHGV-1404846_23	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1404846_24	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1404846_24	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-1404846_24	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-1404846_24	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1404846_24	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1404846_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1404846_25	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1404846_26	PHROG	phrog_8710	NA	unknown function
UHGV-1404846_26	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-1404846_26	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1404846_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1404846_27	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-1404846_28	PHROG	phrog_1378	NA	unknown function
UHGV-1404846_28	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-1404846_29	PHROG	phrog_422	major head protein	head and packaging
UHGV-1404846_29	UniRef90	UniRef90_E7GRG0	Phage major capsid protein	NA
UHGV-1404846_29	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-1404846_29	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1404846_30	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1404846_30	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-1404846_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1404846_32	UniRef90	UniRef90_A0A6M5GD60	Minor capsid protein	NA
UHGV-1404846_32	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-1404846_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1404846_32	COG	COG2369	NA	NA
UHGV-1404846_32	Structural annotation	PF06152	NA	NA
UHGV-1404846_33	PHROG	phrog_25639	NA	unknown function
UHGV-1404846_33	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-1404846_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-1404846_34	UniRef90	UniRef90_A0A1C7G7K7	Capsid protein	NA
UHGV-1404846_34	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1404846_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1404846_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1404846_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1404846_36	UniRef90	UniRef90_A0A1C7G6C9	Terminase	NA
UHGV-1404846_36	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-1404846_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-1404846_36	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1404846_37	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1404846_37	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1404846_37	UniRef90	UniRef90_R5FKE8	Terminase small subunit	NA
UHGV-1404846_37	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-1404846_37	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1404846_37	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1404846_37	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1404846_39	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1404846_39	UniRef90	UniRef90_A0A174EB71	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-1404846_39	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-1404846_39	Pfam	PF07374	NA	DUF1492
UHGV-1404846_39	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1404846_39	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1404846_40	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1404846_41	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1404846_41	UniRef90	UniRef90_UPI001D09145F	bifunctional DNA primase/polymerase	NA
UHGV-1404846_41	eggNOG-mapper	411902.CLOBOL_06670	NA	NA
UHGV-1404846_41	Pfam	PF06048	NA	DUF927
UHGV-1404846_41	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1404846_41	COG	COG5519	NA	NA