UHGV-1404858

Genome information

Genome length 25,258 bps

CDS count 30

Completeness 62.02% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1404858
vOTU ID	vOTU-034426
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0183826
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.35
Jumbo phage	No

Genome content
Genome length	25,258 bps
GC content	56.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	95.83%
Average CDS length	809.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1404858_2	PHROG	phrog_6616	tail protein	tail
UHGV-1404858_2	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-1404858_2	COG	COG4926	Phage-related protein	NA
UHGV-1404858_2	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1404858_3	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1404858_4	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1404858_4	UniRef90	UniRef90_F1TFJ3	Phage tail tape measure protein, TP901 family	NA
UHGV-1404858_4	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-1404858_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1404858_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1404858_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1404858_5	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1404858_5	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-1404858_5	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1404858_5	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1404858_6	PHROG	phrog_706	NA	unknown function
UHGV-1404858_6	UniRef90	UniRef90_A0A175A387	Bacteriophage Gp15 protein	NA
UHGV-1404858_6	eggNOG-mapper	1395513.P343_12620	Bacteriophage Gp15 protein	NA
UHGV-1404858_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1404858_6	Structural annotation	PF06854	NA	NA
UHGV-1404858_7	Structural annotation	PF10666	NA	NA
UHGV-1404858_8	PHROG	phrog_820	major tail protein	tail
UHGV-1404858_8	UniRef90	UniRef90_UPI000BFEA11C	capsid protein	NA
UHGV-1404858_8	eggNOG-mapper	1295642.H839_08339	Belongs to the glycosyl hydrolase family 6	NA
UHGV-1404858_8	COG	COG5492	NA	NA
UHGV-1404858_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1404858_9	Structural annotation	PF12691	NA	NA
UHGV-1404858_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1404858_10	UniRef90	UniRef90_UPI0006C7F62A	minor capsid protein	NA
UHGV-1404858_10	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1404858_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1404858_10	Structural annotation	PF11114	NA	NA
UHGV-1404858_11	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1404858_11	UniRef90	UniRef90_A0A3R6PPU3	Minor capsid protein	NA
UHGV-1404858_11	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-1404858_11	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1404858_11	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-1404858_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1404858_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1404858_13	PHROG	phrog_267	major head protein	head and packaging
UHGV-1404858_13	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-1404858_13	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-1404858_13	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1404858_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1404858_14	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-1404858_16	PHROG	phrog_1233	NA	unknown function
UHGV-1404858_16	Structural annotation	PF13058	NA	NA
UHGV-1404858_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1404858_18	UniRef90	UniRef90_A0A1C6FMR4	Phage minor capsid protein 2	NA
UHGV-1404858_18	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1404858_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1404858_18	COG	COG2369	NA	NA
UHGV-1404858_18	Structural annotation	PF06152	NA	NA
UHGV-1404858_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-1404858_19	UniRef90	UniRef90_A0A349GP64	Portal protein	NA
UHGV-1404858_19	eggNOG-mapper	1460640.JCM19046_3520	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1404858_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1404858_19	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1404858_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1404858_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1404858_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1404858_20	UniRef90	UniRef90_UPI00041C320F	PBSX family phage terminase large subunit	NA
UHGV-1404858_20	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-1404858_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1404858_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1404858_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-1404858_20	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1404858_21	PHROG	phrog_2412	NA	unknown function
UHGV-1404858_21	eggNOG-mapper	173707.Q938L4_9CAUD	NA	NA
UHGV-1404858_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1404858_22	UniRef90	UniRef90_R5GVZ3	Sigma70_r4 domain-containing protein	NA
UHGV-1404858_22	eggNOG-mapper	203119.Cthe_1732	sigma factor activity	NA
UHGV-1404858_22	Pfam	PF07374	NA	DUF1492
UHGV-1404858_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1404858_22	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1404858_24	PHROG	phrog_22040	NA	unknown function
UHGV-1404858_24	Structural annotation	PF02559, NF008636, COG4568	NA	NA
UHGV-1404858_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1404858_25	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1404858_25	UniRef90	UniRef90_R5GVZ7	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1404858_25	eggNOG-mapper	1235792.C808_05386	Endodeoxyribonuclease RusA	NA
UHGV-1404858_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1404858_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1404858_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1404858_26	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1404858_26	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1404858_26	UniRef90	UniRef90_R5GRF1	Primase C terminal 2 (PriCT-2)	NA
UHGV-1404858_26	eggNOG-mapper	610130.Closa_1370	Primase C terminal 2 (PriCT-2)	NA
UHGV-1404858_26	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1404858_26	Pfam	PF13481	AAA domain	AAA_25
UHGV-1404858_26	COG	COG3598	RecA-family ATPase	NA
UHGV-1404858_26	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1404858_27	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1404858_27	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1404858_27	UniRef90	UniRef90_R5H5E1	DNA or RNA helicases of superfamily II	NA
UHGV-1404858_27	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-1404858_27	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1404858_27	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1404858_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1404858_27	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1404858_27	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1404858_28	PHROG	phrog_2698	NA	unknown function
UHGV-1404858_28	UniRef90	UniRef90_A0A3D1HDU6	NA	NA
UHGV-1404858_28	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-1404858_28	Structural annotation	PF05037	NA	NA
UHGV-1404858_29	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1404858_29	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-1404858_29	eggNOG-mapper	1140001.I571_01813	AAA domain	NA
UHGV-1404858_29	Pfam	PF13479	AAA domain	AAA_24
UHGV-1404858_29	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1404858_30	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1404858_30	PHROG	phrog_1499	NA	unknown function
UHGV-1404858_30	UniRef90	UniRef90_A0A3D4L3T4	Chromosome segregation protein SMC	NA
UHGV-1404858_30	eggNOG-mapper	1273103.NM10_06866	AAA domain	NA
UHGV-1404858_30	Pfam	PF13476	AAA domain	AAA_23
UHGV-1404858_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1404858_30	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA