UHGV-1404921

Genome information

Genome length 28,803 bps

CDS count 47

Completeness 66.62% (medium-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-1404921
vOTU ID	vOTU-024973
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0204636
BioSample	SAMEA2338835
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.34
Jumbo phage	No

Genome content
Genome length	28,803 bps
GC content	52.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.62%
Average CDS length	567.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1404921_1	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-1404921_2	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1404921_2	PHROG	phrog_819	tail protein	tail
UHGV-1404921_2	UniRef90	UniRef90_UPI00164C9345	collagen-like protein	NA
UHGV-1404921_2	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-1404921_2	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1404921_3	PHROG	phrog_24267	NA	unknown function
UHGV-1404921_3	UniRef90	UniRef90_E0I8Z9	Tail Collar domain protein	NA
UHGV-1404921_3	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1404921_3	COG	COG4675	Phage tail collar domain	NA
UHGV-1404921_3	Structural annotation	COG4675	NA	NA
UHGV-1404921_4	KOfam	K07273	acm; lysozyme	NA
UHGV-1404921_4	PHROG	phrog_291	endolysin	lysis
UHGV-1404921_4	UniRef90	UniRef90_A0A1Q6T343	Peptidase_M23 domain-containing protein	NA
UHGV-1404921_4	eggNOG-mapper	1408322.JHYK01000015_gene1912	Glycosyl hydrolase, family 25	NA
UHGV-1404921_4	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1404921_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1404921_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1404921_4	Structural annotation	PF01551, PF01183, NF040883, COG0739, COG3757	NA	NA
UHGV-1404921_5	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-1404921_5	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-1404921_6	PHROG	phrog_13256	NA	unknown function
UHGV-1404921_6	eggNOG-mapper	1226322.HMPREF1545_02800	NA	NA
UHGV-1404921_8	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-1404921_8	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1404921_9	KOfam	K19666	solR, cepR, tofR; LuxR family transcriptional regulator, quorum-sensing system regulator SolR	NA
UHGV-1404921_9	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1404921_9	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-1404921_9	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-1404921_10	PHROG	phrog_21718	NA	unknown function
UHGV-1404921_10	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1404921_11	PHROG	phrog_22984	NA	unknown function
UHGV-1404921_12	PHROG	phrog_16490	NA	unknown function
UHGV-1404921_12	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-1404921_13	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1404921_14	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1404921_15	Structural annotation	PF08281, MF_00674, TIGR01636	NA	NA
UHGV-1404921_18	PHROG	phrog_924	NA	unknown function
UHGV-1404921_18	UniRef90	UniRef90_A0A4R4IL87	NA	NA
UHGV-1404921_18	Pfam	PF04448	NA	DUF551
UHGV-1404921_18	Structural annotation	NF041588	NA	NA
UHGV-1404921_20	Structural annotation	PF16069, NF040508	NA	NA
UHGV-1404921_21	PHROG	phrog_9958	NA	unknown function
UHGV-1404921_21	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-1404921_21	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-1404921_21	Structural annotation	PF19789	NA	NA
UHGV-1404921_25	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1404921_25	UniRef90	UniRef90_A0A3G2R5K0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1404921_25	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-1404921_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1404921_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1404921_26	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1404921_26	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-1404921_26	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1404921_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1404921_27	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1404921_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1404921_27	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1404921_27	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1404921_27	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1404921_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1404921_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1404921_27	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-1404921_28	UniRef90	UniRef90_K1SZ48	Phosphoadenosine phosphosulfate reductase (Fragment)	NA
UHGV-1404921_28	eggNOG-mapper	411902.CLOBOL_06768	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1404921_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1404921_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1404921_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1404921_29	UniRef90	UniRef90_A0A6N8H4T4	Single-stranded DNA-binding protein	NA
UHGV-1404921_29	eggNOG-mapper	657322.FPR_24250	Single-stranded DNA-binding protein	NA
UHGV-1404921_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1404921_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1404921_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1404921_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1404921_29	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-1404921_30	PHROG	phrog_9804	NA	unknown function
UHGV-1404921_31	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-1404921_31	PHROG	phrog_16304	NA	unknown function
UHGV-1404921_31	UniRef90	UniRef90_UPI001874F31C	DnaD domain protein	NA
UHGV-1404921_31	Pfam	PF19808	NA	DUF6291
UHGV-1404921_31	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1404921_31	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1404921_31	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-1404921_32	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1404921_32	UniRef90	UniRef90_UPI0012DD1D82	MBL fold metallo-hydrolase	NA
UHGV-1404921_32	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1404921_32	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1404921_32	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1404921_32	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-1404921_33	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1404921_33	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1404921_33	UniRef90	UniRef90_A0A329URJ6	Recombinase	NA
UHGV-1404921_33	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-1404921_33	Pfam	PF03837	RecT family	RecT
UHGV-1404921_33	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1404921_33	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1404921_33	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1404921_34	PHROG	phrog_674	NA	unknown function
UHGV-1404921_34	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-1404921_34	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-1404921_34	Pfam	PF07083	NA	DUF1351
UHGV-1404921_34	Structural annotation	PF07083	NA	NA
UHGV-1404921_37	PHROG	phrog_7964	NA	unknown function
UHGV-1404921_37	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-1404921_37	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1404921_37	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-1404921_37	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1404921_42	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-1404921_42	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-1404921_43	UniRef90	UniRef90_UPI00189845EC	helix-turn-helix domain-containing protein	NA
UHGV-1404921_43	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-1404921_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1404921_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1404921_43	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1404921_46	Structural annotation	PF15729	NA	NA
UHGV-1404921_47	KOfam	K14059	int; integrase	NA
UHGV-1404921_47	PHROG	phrog_1	integrase	integration and excision
UHGV-1404921_47	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1404921_47	COG	COG0582	Integrase/recombinase, includes phage integrase	NA