UHGV-1405893

Genome information

Genome length 25,809 bps

CDS count 44

Completeness 63.58% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1405893
vOTU ID	vOTU-024987
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0187271
BioSample	SAMEA2580076
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.97
Jumbo phage	No

Genome content
Genome length	25,809 bps
GC content	53.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	92.41%
Average CDS length	546.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1405893_1	PHROG	phrog_32744	NA	unknown function
UHGV-1405893_1	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-1405893_1	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-1405893_3	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1405893_3	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-1405893_3	COG	COG1511	NA	NA
UHGV-1405893_5	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-1405893_6	PHROG	phrog_885	major tail protein	tail
UHGV-1405893_6	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1405893_6	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1405893_6	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1405893_7	PHROG	phrog_17405	head protein	head and packaging
UHGV-1405893_7	Structural annotation	PF11367	NA	NA
UHGV-1405893_8	PHROG	phrog_1233	NA	unknown function
UHGV-1405893_8	eggNOG-mapper	936375.HMPREF1152_1074	NA	NA
UHGV-1405893_9	PHROG	phrog_17977	NA	unknown function
UHGV-1405893_9	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1405893_9	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1405893_11	PHROG	phrog_544	major head protein	head and packaging
UHGV-1405893_11	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1405893_11	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1405893_11	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1405893_12	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1405893_12	Structural annotation	PF06810	NA	NA
UHGV-1405893_13	Structural annotation	PF18152	NA	NA
UHGV-1405893_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1405893_14	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-1405893_14	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-1405893_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1405893_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1405893_14	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1405893_15	PHROG	phrog_29609	NA	unknown function
UHGV-1405893_15	UniRef90	UniRef90_A0A3D3Y165	Phage_Mu_F domain-containing protein	NA
UHGV-1405893_15	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1405893_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1405893_15	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-1405893_15	COG	COG2369	NA	NA
UHGV-1405893_16	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1405893_16	eggNOG-mapper	1235797.C816_01664	COG NOG12663 non supervised orthologous group	NA
UHGV-1405893_16	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1405893_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-1405893_17	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1405893_17	eggNOG-mapper	1408437.JNJN01000045_gene595	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1405893_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1405893_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1405893_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1405893_18	PHROG	phrog_10250	NA	unknown function
UHGV-1405893_18	UniRef90	UniRef90_A0A1C6J947	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-1405893_18	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1405893_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1405893_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1405893_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-1405893_18	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1405893_20	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-1405893_20	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1405893_20	Pfam	PF04218	CENP-B N-terminal DNA-binding domain	CENP-B_N
UHGV-1405893_20	Structural annotation	PF13542	NA	NA
UHGV-1405893_21	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-1405893_21	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1405893_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1405893_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1405893_21	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1405893_25	UniRef90	UniRef90_A0A1C6J8Z2	Helix-turn-helix	NA
UHGV-1405893_25	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-1405893_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1405893_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1405893_25	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1405893_26	PHROG	phrog_8684	NA	unknown function
UHGV-1405893_26	UniRef90	UniRef90_UPI00195CB2B3	YopX family protein	NA
UHGV-1405893_26	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-1405893_26	Pfam	PF09643	YopX protein	YopX
UHGV-1405893_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1405893_30	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1405893_30	UniRef90	UniRef90_UPI001C3BADA7	Radical SAM protein	NA
UHGV-1405893_30	eggNOG-mapper	1235797.C816_00412	NA	NA
UHGV-1405893_30	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1405893_30	Structural annotation	PF04055, MF_01865, TIGR04013, COG0320	NA	NA
UHGV-1405893_31	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1405893_31	UniRef90	UniRef90_A0A658JBA8	Radical SAM protein (Fragment)	NA
UHGV-1405893_31	eggNOG-mapper	1235797.C816_00412	NA	NA
UHGV-1405893_31	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1405893_32	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-1405893_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1405893_34	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1405893_34	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1405893_34	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1405893_36	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1405893_36	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1405893_36	UniRef90	UniRef90_UPI0009529D7E	AAA family ATPase	NA
UHGV-1405893_36	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-1405893_36	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1405893_36	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1405893_36	COG	COG0305	Replicative DNA helicase	NA
UHGV-1405893_36	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1405893_37	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1405893_37	UniRef90	UniRef90_UPI00095201A6	NA	NA
UHGV-1405893_37	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-1405893_37	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1405893_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1405893_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1405893_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1405893_38	UniRef90	UniRef90_A0A0S2W7E3	Single-stranded DNA-binding protein	NA
UHGV-1405893_38	eggNOG-mapper	1297617.JPJD01000076_gene1093	Single-strand binding protein family	NA
UHGV-1405893_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1405893_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1405893_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1405893_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1405893_38	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1405893_39	PHROG	phrog_7566	NA	unknown function
UHGV-1405893_39	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-1405893_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1405893_40	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-1405893_40	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-1405893_40	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1405893_41	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1405893_41	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-1405893_41	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-1405893_41	Pfam	PF04404	ERF superfamily	ERF
UHGV-1405893_41	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1405893_43	PHROG	phrog_1123	NA	unknown function
UHGV-1405893_43	UniRef90	UniRef90_A0A858BT04	DNA gyrase	NA
UHGV-1405893_43	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-1405893_43	Structural annotation	PF04703, MF_01804, TIGR00373, COG1695	NA	NA
UHGV-1405893_44	eggNOG-mapper	1156919.QWC_27991	Flagellar Assembly Protein A	NA
UHGV-1405893_44	COG	COG1315	Flagellar assembly protein FapA, interacts with EIIAGlc	NA