UHGV-1406749

Genome information

Genome length 25,992 bps

CDS count 38

Completeness 72.75% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-1406749
vOTU ID	vOTU-034463
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0188431
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.75% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.34
Jumbo phage	No

Genome content
Genome length	25,992 bps
GC content	28.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	82.86%
Average CDS length	568.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1406749_7	PHROG	phrog_824	NA	unknown function
UHGV-1406749_7	UniRef90	UniRef90_UPI000B821158	VRR-NUC domain-containing protein	NA
UHGV-1406749_7	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-1406749_7	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1406749_7	Structural annotation	PF08774	NA	NA
UHGV-1406749_8	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1406749_8	UniRef90	UniRef90_A0A1C5YDW7	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-1406749_9	eggNOG-mapper	536233.CLO_1358	NA	NA
UHGV-1406749_11	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1406749_11	PHROG	phrog_216	integrase	integration and excision
UHGV-1406749_11	UniRef90	UniRef90_H6LIU8	Tyr recombinase domain-containing protein	NA
UHGV-1406749_11	eggNOG-mapper	931626.Awo_c35160	PFAM Phage integrase family	NA
UHGV-1406749_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1406749_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1406749_11	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-1406749_12	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1406749_12	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1406749_12	UniRef90	UniRef90_UPI000F06AC0F	HNH endonuclease	NA
UHGV-1406749_12	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-1406749_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1406749_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1406749_13	PHROG	phrog_1066	NA	unknown function
UHGV-1406749_13	eggNOG-mapper	1280689.AUJC01000011_gene1517	NA	NA
UHGV-1406749_13	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1406749_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1406749_14	UniRef90	UniRef90_UPI000F049817	terminase large subunit	NA
UHGV-1406749_14	eggNOG-mapper	573061.Clocel_2440	Terminase	NA
UHGV-1406749_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1406749_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1406749_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1406749_14	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1406749_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-1406749_15	UniRef90	UniRef90_UPI000F06564A	phage portal protein	NA
UHGV-1406749_15	eggNOG-mapper	931276.Cspa_c10150	Portal protein	NA
UHGV-1406749_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1406749_15	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1406749_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1406749_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1406749_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1406749_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1406749_16	UniRef90	UniRef90_UPI000F061B25	Clp protease ClpP	NA
UHGV-1406749_16	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-1406749_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1406749_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1406749_16	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-1406749_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1406749_17	UniRef90	UniRef90_UPI000F05CD81	phage major capsid protein	NA
UHGV-1406749_17	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1406749_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1406749_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1406749_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1406749_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1406749_18	PHROG	phrog_5223	neck protein	connector
UHGV-1406749_18	UniRef90	UniRef90_UPI000F062078	head-tail connector protein	NA
UHGV-1406749_18	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-1406749_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1406749_18	Structural annotation	TIGR01560	NA	NA
UHGV-1406749_19	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1406749_19	UniRef90	UniRef90_UPI000F066148	phage head closure protein	NA
UHGV-1406749_19	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-1406749_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1406749_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1406749_20	UniRef90	UniRef90_UPI000F05B9C3	HK97 gp10 family phage protein	NA
UHGV-1406749_20	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-1406749_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1406749_21	PHROG	phrog_957	head protein	head and packaging
UHGV-1406749_21	UniRef90	UniRef90_UPI001C0F6033	NA	NA
UHGV-1406749_21	eggNOG-mapper	1414720.CBYM010000040_gene1651	NA	NA
UHGV-1406749_21	Pfam	PF11367	NA	DUF3168
UHGV-1406749_21	Structural annotation	PF11367, COG4722	NA	NA
UHGV-1406749_22	PHROG	phrog_885	major tail protein	tail
UHGV-1406749_22	eggNOG-mapper	1414720.CBYM010000040_gene1652	NA	NA
UHGV-1406749_22	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-1406749_23	PHROG	phrog_1021	NA	unknown function
UHGV-1406749_23	eggNOG-mapper	398512.JQKC01000009_gene459	NA	NA
UHGV-1406749_24	eggNOG-mapper	1414720.CBYM010000040_gene1654	NA	NA
UHGV-1406749_25	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1406749_25	UniRef90	UniRef90_UPI000F057568	phage tail tape measure protein	NA
UHGV-1406749_25	eggNOG-mapper	552396.HMPREF0863_01444	Phage tail tape measure protein, TP901 family	NA
UHGV-1406749_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1406749_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1406749_25	COG	COG5283	Phage-related tail protein	NA
UHGV-1406749_26	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1406749_26	UniRef90	UniRef90_UPI0013776F4D	NA	NA
UHGV-1406749_26	eggNOG-mapper	1560313.A0A0D3MT84_9CAUD	regulation of transcription, DNA-dependent	NA
UHGV-1406749_26	Structural annotation	PF18741, PF14311, MF_04160, NF007294, COG3727	NA	NA
UHGV-1406749_27	PHROG	phrog_38258	NA	unknown function
UHGV-1406749_27	UniRef90	UniRef90_UPI0004D920DE	phage tail tape measure protein	NA
UHGV-1406749_27	eggNOG-mapper	386415.NT01CX_2164	tail tape measure protein	NA
UHGV-1406749_27	COG	COG5283	Phage-related tail protein	NA
UHGV-1406749_28	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1406749_28	UniRef90	UniRef90_UPI0004ACC375	phage tail family protein	NA
UHGV-1406749_28	eggNOG-mapper	1414720.CBYM010000040_gene1656	PFAM Phage tail protein	NA
UHGV-1406749_28	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1406749_28	COG	COG4722	Phage-related protein YomH	NA
UHGV-1406749_28	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1406749_29	PHROG	phrog_3558	tail protein	tail
UHGV-1406749_29	UniRef90	UniRef90_UPI0018A9A0AF	phage tail protein	NA
UHGV-1406749_29	eggNOG-mapper	1414720.CBYM010000040_gene1657	Phage minor structural protein, N-terminal	NA
UHGV-1406749_29	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1406749_29	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1406749_29	COG	COG4926	Phage-related protein	NA
UHGV-1406749_29	Structural annotation	PF06605, PF09931, TIGR01665, COG4926	NA	NA
UHGV-1406749_30	KOfam	K01186	NEU1; sialidase-1 [EC:3.2.1.18]	NA
UHGV-1406749_30	eggNOG-mapper	1292035.H476_2657	BNR repeat-like domain	NA
UHGV-1406749_30	Pfam	PF13859	BNR repeat-like domain	BNR_3
UHGV-1406749_30	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-1406749_32	PHROG	phrog_199	holin	lysis
UHGV-1406749_32	UniRef90	UniRef90_UPI001E61EBDA	phage holin family protein	NA
UHGV-1406749_32	eggNOG-mapper	536233.CLO_1583	toxin secretion phage lysis holin	NA
UHGV-1406749_32	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1406749_32	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1406749_32	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1406749_32	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1406749_33	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1406749_33	PHROG	phrog_3088	amidase	lysis
UHGV-1406749_33	UniRef90	UniRef90_A0A7X9B8R6	SH3 domain-containing protein	NA
UHGV-1406749_33	eggNOG-mapper	1117379.BABA_01345	n-acetylmuramoyl-L-alanine amidase	NA
UHGV-1406749_33	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1406749_33	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1406749_33	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1406749_33	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-1406749_34	eggNOG-mapper	857293.CAAU_1566	NA	NA
UHGV-1406749_38	PHROG	phrog_2329	NA	unknown function
UHGV-1406749_38	UniRef90	UniRef90_UPI0018AB79C1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-1406749_38	Structural annotation	PF04014, NF007312, COG2336	NA	NA