UHGV-1406816

Genome information

Genome length 25,172 bps

CDS count 37

Completeness 84.87% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-1406816
vOTU ID	vOTU-034526
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0183270
BioSample	SAMEA3136756
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.74
Jumbo phage	No

Genome content
Genome length	25,172 bps
GC content	50.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.69%
Average CDS length	641.51 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1406816_4	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1406816_4	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1406816_4	UniRef90	UniRef90_A0A1S1V6E1	Endodeoxyribonuclease RusA	NA
UHGV-1406816_4	eggNOG-mapper	665956.HMPREF1032_03604	Endodeoxyribonuclease RusA	NA
UHGV-1406816_4	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1406816_4	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1406816_4	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1406816_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1406816_5	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-1406816_6	PHROG	phrog_21498	NA	unknown function
UHGV-1406816_6	UniRef90	UniRef90_A0A4Q5AKJ0	Chromosome partitioning protein ParB	NA
UHGV-1406816_6	eggNOG-mapper	1121866.AUGK01000014_gene2036	DNA binding	NA
UHGV-1406816_6	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1406816_6	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-1406816_7	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1406816_7	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1406816_7	UniRef90	UniRef90_A0A174PE70	HNHc domain-containing protein	NA
UHGV-1406816_7	eggNOG-mapper	931626.Awo_c31080	HNH nucleases	NA
UHGV-1406816_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1406816_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1406816_7	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1406816_8	PHROG	phrog_1066	NA	unknown function
UHGV-1406816_8	UniRef90	UniRef90_A0A7G5C3E9	P27 family phage terminase small subunit	NA
UHGV-1406816_8	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-1406816_8	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1406816_9	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1406816_9	UniRef90	UniRef90_A0A1Y3R957	Terminase	NA
UHGV-1406816_9	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-1406816_9	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1406816_9	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1406816_9	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1406816_9	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1406816_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-1406816_10	UniRef90	UniRef90_A0A7X7AAU2	Phage portal protein	NA
UHGV-1406816_10	eggNOG-mapper	411465.PEPMIC_00733	Phage portal protein	NA
UHGV-1406816_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1406816_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1406816_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1406816_11	KOfam	K06904	NA	NA
UHGV-1406816_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1406816_11	UniRef90	UniRef90_E6MGY2	Phage prohead protease, HK97 family	NA
UHGV-1406816_11	eggNOG-mapper	887929.HMP0721_1266	Caudovirus prohead serine protease	NA
UHGV-1406816_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1406816_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1406816_11	COG	COG3740	Phage head maturation protease	NA
UHGV-1406816_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1406816_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-1406816_12	UniRef90	UniRef90_UPI00040EA8CF	phage major capsid protein	NA
UHGV-1406816_12	eggNOG-mapper	1123263.AUKY01000046_gene469	Phage capsid family	NA
UHGV-1406816_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1406816_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1406816_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1406816_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1406816_13	PHROG	phrog_5223	neck protein	connector
UHGV-1406816_13	UniRef90	UniRef90_M1MA30	NA	NA
UHGV-1406816_13	eggNOG-mapper	931276.Cspa_c10180	NA	NA
UHGV-1406816_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1406816_13	Structural annotation	TIGR01560	NA	NA
UHGV-1406816_14	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1406816_14	UniRef90	UniRef90_UPI001959FB60	phage head closure protein	NA
UHGV-1406816_14	eggNOG-mapper	1033744.CAEL01000029_gene1279	head-tail adaptor	NA
UHGV-1406816_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1406816_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1406816_14	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1406816_15	UniRef90	UniRef90_UPI001E359353	HK97 gp10 family phage protein	NA
UHGV-1406816_15	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-1406816_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1406816_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1406816_16	eggNOG-mapper	1280671.AUJH01000012_gene3145	NA	NA
UHGV-1406816_16	Structural annotation	PF05657	NA	NA
UHGV-1406816_17	PHROG	phrog_88	major tail protein	tail
UHGV-1406816_17	UniRef90	UniRef90_A0A7X6CWI9	Phage tail protein	NA
UHGV-1406816_17	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-1406816_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1406816_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1406816_18	PHROG	phrog_709	NA	unknown function
UHGV-1406816_18	UniRef90	UniRef90_B7IYA6	Putative prophage pi2 protein 40	NA
UHGV-1406816_18	eggNOG-mapper	1111134.HMPREF1253_0376	NA	NA
UHGV-1406816_18	Structural annotation	PF11836	NA	NA
UHGV-1406816_19	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1406816_19	UniRef90	UniRef90_A0A1H4RSW2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1406816_19	eggNOG-mapper	1118059.CAHC01000003_gene808	Phage tail tape measure protein, TP901 family	NA
UHGV-1406816_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1406816_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1406816_19	COG	COG5283	Phage-related tail protein	NA
UHGV-1406816_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1406816_20	Structural annotation	PF20458, TIGR02241, COG3499	NA	NA
UHGV-1406816_23	Structural annotation	PF09458, NF012201	NA	NA
UHGV-1406816_24	eggNOG-mapper	1410624.JNKK01000017_gene1988	NA	NA
UHGV-1406816_26	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-1406816_26	UniRef90	UniRef90_A0A412ELA1	Helix-turn-helix domain-containing protein	NA
UHGV-1406816_26	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-1406816_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1406816_26	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1406816_26	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-1406816_27	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-1406816_28	PHROG	phrog_1129	holin	lysis
UHGV-1406816_28	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-1406816_28	eggNOG-mapper	1232447.BAHW02000005_gene155	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1406816_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1406816_28	Structural annotation	PF06946	NA	NA
UHGV-1406816_29	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1406816_29	PHROG	phrog_435	endolysin	lysis
UHGV-1406816_29	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1406816_29	eggNOG-mapper	1392487.JIAD01000001_gene506	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1406816_29	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1406816_29	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1406816_29	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1406816_30	COG	COG5492	NA	NA
UHGV-1406816_30	Structural annotation	PF18341, NF040678, COG4991	NA	NA
UHGV-1406816_31	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-1406816_32	PHROG	phrog_21718	NA	unknown function
UHGV-1406816_32	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1406816_34	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-1406816_35	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1406816_37	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1406816_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1406816_37	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA