UHGV-1407104

Genome information

vOTU vOTU-022095

Genome length 37,476 bps

CDS count 63

Completeness 86.35% (medium-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-1407104
vOTU ID	vOTU-022095
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0254328
BioSample	SAMN06111954
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.34
Jumbo phage	No

Genome content
Genome length	37,476 bps
GC content	40.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	89.90%
Average CDS length	537.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1407104_1	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1407104_1	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1407104_1	UniRef90	UniRef90_N9XN33	IstB_IS21 domain-containing protein	NA
UHGV-1407104_1	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-1407104_1	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1407104_1	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1407104_3	PHROG	phrog_15198	NA	unknown function
UHGV-1407104_3	UniRef90	UniRef90_A0A0F0C886	NA	NA
UHGV-1407104_3	Pfam	PF04448	NA	DUF551
UHGV-1407104_3	Structural annotation	PF21627	NA	NA
UHGV-1407104_5	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1407104_5	UniRef90	UniRef90_UPI0008CB9E81	NA	NA
UHGV-1407104_5	eggNOG-mapper	1321782.HMPREF1986_00323	NA	NA
UHGV-1407104_5	Pfam	PF12961	NA	DUF3850
UHGV-1407104_5	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-1407104_6	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1407104_6	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-1407104_6	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1407104_8	PHROG	phrog_918	NA	unknown function
UHGV-1407104_8	UniRef90	UniRef90_UPI00195F2652	NA	NA
UHGV-1407104_8	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-1407104_8	Pfam	PF19791	NA	DUF6275
UHGV-1407104_8	Structural annotation	PF19791	NA	NA
UHGV-1407104_11	UniRef90	UniRef90_UPI00046712EE	NA	NA
UHGV-1407104_11	Pfam	PF04448	NA	DUF551
UHGV-1407104_12	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1407104_12	PHROG	phrog_1	integrase	integration and excision
UHGV-1407104_12	UniRef90	UniRef90_UPI001D14C144	tyrosine-type recombinase/integrase	NA
UHGV-1407104_12	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-1407104_12	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1407104_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1407104_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1407104_12	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-1407104_13	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-1407104_13	AcrCatalog	cluster_11670	NA	NA
UHGV-1407104_14	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1407104_14	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-1407104_14	UniRef90	UniRef90_R0BKE5	HTH cro/C1-type domain-containing protein	NA
UHGV-1407104_14	eggNOG-mapper	1303692.SFUL_5559	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1407104_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1407104_15	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1407104_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1407104_15	UniRef90	UniRef90_A0A0U5I2B2	HTH-type transcriptional regulator ImmR	NA
UHGV-1407104_15	eggNOG-mapper	1408323.JQKK01000006_gene530	Helix-turn-helix XRE-family like proteins	NA
UHGV-1407104_15	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1407104_15	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-1407104_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1407104_15	NCBIFam	NF041951.1	RstR family transcriptional repressor	NA
UHGV-1407104_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1407104_15	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1407104_16	UniRef90	UniRef90_A0A414AGA1	Helix-turn-helix domain-containing protein	NA
UHGV-1407104_16	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-1407104_16	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1407104_16	Structural annotation	PF13542	NA	NA
UHGV-1407104_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1407104_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1407104_17	UniRef90	UniRef90_R0BLA8	PBSX family phage terminase, large subunit	NA
UHGV-1407104_17	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-1407104_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1407104_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1407104_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-1407104_17	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1407104_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-1407104_19	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-1407104_19	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1407104_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1407104_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1407104_20	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-1407104_20	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-1407104_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1407104_20	COG	COG2369	NA	NA
UHGV-1407104_20	Structural annotation	PF06152	NA	NA
UHGV-1407104_21	PHROG	phrog_3754	NA	unknown function
UHGV-1407104_21	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1407104_22	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-1407104_22	eggNOG-mapper	411490.ANACAC_00705	NA	NA
UHGV-1407104_23	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1407104_23	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-1407104_23	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-1407104_25	PHROG	phrog_21718	NA	unknown function
UHGV-1407104_25	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1407104_26	PHROG	phrog_22984	NA	unknown function
UHGV-1407104_27	PHROG	phrog_16490	NA	unknown function
UHGV-1407104_27	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-1407104_29	PHROG	phrog_20016	NA	unknown function
UHGV-1407104_29	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-1407104_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1407104_30	PHROG	phrog_28802	NA	unknown function
UHGV-1407104_30	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1407104_31	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1407104_31	UniRef90	UniRef90_A0A0U5PL36	AP2 domain protein	NA
UHGV-1407104_31	eggNOG-mapper	1304866.K413DRAFT_4685	NA	NA
UHGV-1407104_31	Structural annotation	PF00847	NA	NA
UHGV-1407104_32	UniRef90	UniRef90_N9YMZ1	HTH cro/C1-type domain-containing protein	NA
UHGV-1407104_32	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-1407104_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1407104_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1407104_32	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1407104_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1407104_34	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-1407104_34	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-1407104_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1407104_35	PHROG	phrog_544	major head protein	head and packaging
UHGV-1407104_35	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-1407104_35	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1407104_35	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1407104_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1407104_36	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-1407104_37	PHROG	phrog_1129	holin	lysis
UHGV-1407104_37	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-1407104_37	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1407104_37	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1407104_37	Structural annotation	PF06946	NA	NA
UHGV-1407104_38	PHROG	phrog_3366	NA	unknown function
UHGV-1407104_38	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-1407104_38	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1407104_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1407104_39	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-1407104_39	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1407104_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1407104_39	Structural annotation	PF11114	NA	NA
UHGV-1407104_40	PHROG	phrog_3266	tail completion	connector
UHGV-1407104_40	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-1407104_40	Structural annotation	PF12691	NA	NA
UHGV-1407104_41	PHROG	phrog_3099	NA	unknown function
UHGV-1407104_41	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-1407104_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1407104_42	PHROG	phrog_11299	NA	unknown function
UHGV-1407104_42	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-1407104_42	Structural annotation	PF10666	NA	NA
UHGV-1407104_43	PHROG	phrog_706	NA	unknown function
UHGV-1407104_43	UniRef90	UniRef90_UPI001D1485B4	bacteriophage Gp15 family protein	NA
UHGV-1407104_43	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-1407104_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1407104_43	Structural annotation	PF06854	NA	NA
UHGV-1407104_44	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1407104_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1407104_44	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-1407104_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1407104_44	Structural annotation	PF11172	NA	NA
UHGV-1407104_45	PHROG	phrog_1194	NA	unknown function
UHGV-1407104_45	eggNOG-mapper	1304866.K413DRAFT_3047	NA	NA
UHGV-1407104_45	Pfam	PF20458	NA	DUF6711
UHGV-1407104_45	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1407104_46	PHROG	phrog_18190	NA	unknown function
UHGV-1407104_46	UniRef90	UniRef90_UPI001D15C06A	tail fiber domain-containing protein	NA
UHGV-1407104_46	eggNOG-mapper	1298920.KI911353_gene2679	NA	NA
UHGV-1407104_46	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1407104_46	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-1407104_48	PHROG	phrog_17196	kinase	other
UHGV-1407104_48	UniRef90	UniRef90_A0A2M8Z316	Collagen triple helix repeat protein	NA
UHGV-1407104_48	eggNOG-mapper	1298920.KI911353_gene2674	NA	NA
UHGV-1407104_48	Structural annotation	PF13619, COG3536	NA	NA
UHGV-1407104_49	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-1407104_49	Structural annotation	PF14600	NA	NA
UHGV-1407104_50	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1407104_50	UniRef90	UniRef90_A0A8B3A5C7	NA	NA
UHGV-1407104_50	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-1407104_50	Pfam	PF14359	NA	DUF4406
UHGV-1407104_50	Structural annotation	PF14359, COG3613	NA	NA
UHGV-1407104_51	PHROG	phrog_12931	NA	unknown function
UHGV-1407104_51	eggNOG-mapper	1298920.KI911353_gene2672	NA	NA
UHGV-1407104_52	UniRef90	UniRef90_A0A352P5F4	XkdX family protein	NA
UHGV-1407104_52	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1407104_53	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-1407104_53	PHROG	phrog_2649	endolysin	lysis
UHGV-1407104_53	UniRef90	UniRef90_R0BKC0	Peptidase_M15_4 domain-containing protein	NA
UHGV-1407104_53	eggNOG-mapper	742733.HMPREF9469_01368	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-1407104_53	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-1407104_53	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-1407104_53	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-1407104_55	KOfam	K14059	int; integrase	NA
UHGV-1407104_55	PHROG	phrog_1	integrase	integration and excision
UHGV-1407104_55	UniRef90	UniRef90_UPI001D155F20	tyrosine-type recombinase/integrase	NA
UHGV-1407104_55	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1407104_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1407104_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1407104_55	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1407104_56	eggNOG-mapper	1128398.Curi_c22020	cell wall binding repeat	NA
UHGV-1407104_56	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-1407104_57	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-1407104_57	UniRef90	UniRef90_UPI001EDCCFB6	phage minor capsid protein	NA
UHGV-1407104_57	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-1407104_57	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1407104_57	Structural annotation	PF06152	NA	NA
UHGV-1407104_58	PHROG	phrog_20886	NA	unknown function
UHGV-1407104_58	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-1407104_58	Structural annotation	PF06114	NA	NA
UHGV-1407104_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1407104_59	UniRef90	UniRef90_UPI0013F5AD04	helix-turn-helix domain-containing protein	NA
UHGV-1407104_59	eggNOG-mapper	476272.RUMHYD_02826	TRANSCRIPTIONal	NA
UHGV-1407104_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1407104_59	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1407104_59	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1407104_61	UniRef90	UniRef90_A0A414AEB7	DNA-binding protein	NA
UHGV-1407104_61	eggNOG-mapper	610130.Closa_1362	Helix-turn-helix domain	NA
UHGV-1407104_61	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1407104_61	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1407104_61	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-1407104_63	PHROG	phrog_3240	NA	unknown function