UHGV-1407261

Genome information

Genome length 37,393 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-1407261
vOTU ID	vOTU-011569
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0253834
BioSample	SAMN00146029
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.58
Jumbo phage	No

Genome content
Genome length	37,393 bps
GC content	44.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	85.48%
Average CDS length	519.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1407261_1	PHROG	phrog_10	major head protein	head and packaging
UHGV-1407261_1	UniRef90	UniRef90_A0A350TW17	Phage major capsid protein (Fragment)	NA
UHGV-1407261_1	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-1407261_1	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1407261_1	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1407261_1	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1407261_2	PHROG	phrog_5223	neck protein	connector
UHGV-1407261_2	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-1407261_2	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-1407261_2	Structural annotation	TIGR01560	NA	NA
UHGV-1407261_3	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1407261_3	UniRef90	UniRef90_UPI000BF0079F	phage head closure protein	NA
UHGV-1407261_3	eggNOG-mapper	1033738.CAEP01000018_gene3675	head-tail adaptor	NA
UHGV-1407261_3	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1407261_3	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1407261_4	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1407261_4	UniRef90	UniRef90_A0A7V7BBM4	HK97 gp10 family phage protein	NA
UHGV-1407261_4	eggNOG-mapper	1123314.AUIO01000016_gene844	NA	NA
UHGV-1407261_4	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1407261_4	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1407261_5	PHROG	phrog_78	tail terminator	connector
UHGV-1407261_5	UniRef90	UniRef90_E7GJW4	Prophage pi2 protein 38	NA
UHGV-1407261_5	eggNOG-mapper	476272.RUMHYD_01476	COG NOG18352 non supervised orthologous group	NA
UHGV-1407261_5	Structural annotation	PF20765	NA	NA
UHGV-1407261_6	PHROG	phrog_2175	protein with Ig domain	other
UHGV-1407261_6	eggNOG-mapper	755731.Clo1100_0552	NA	NA
UHGV-1407261_6	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1407261_7	eggNOG-mapper	1280689.AUJC01000007_gene3310	NA	NA
UHGV-1407261_7	Structural annotation	PF17388	NA	NA
UHGV-1407261_8	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1407261_8	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1407261_8	UniRef90	UniRef90_A0A350TW28	Phage tail tape measure protein	NA
UHGV-1407261_8	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-1407261_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1407261_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1407261_8	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1407261_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1407261_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1407261_9	UniRef90	UniRef90_A0A350TW29	Phage tail protein	NA
UHGV-1407261_9	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-1407261_9	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1407261_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-1407261_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1407261_10	PHROG	phrog_863	tail fiber assembly	tail
UHGV-1407261_10	UniRef90	UniRef90_R5AIX9	BppU_N domain-containing protein	NA
UHGV-1407261_10	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-1407261_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1407261_10	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1407261_10	Structural annotation	PF10651, PF21722, NF032891, COG2372	NA	NA
UHGV-1407261_12	PHROG	phrog_2310	NA	unknown function
UHGV-1407261_12	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-1407261_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1407261_13	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-1407261_13	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-1407261_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1407261_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1407261_13	COG	COG4926	Phage-related protein	NA
UHGV-1407261_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1407261_14	PHROG	phrog_937	hemolysin	other
UHGV-1407261_14	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1407261_16	PHROG	phrog_13256	NA	unknown function
UHGV-1407261_16	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-1407261_17	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1407261_17	UniRef90	UniRef90_A0A5Q2WAZ9	HNH catalytic motif-containing protein	NA
UHGV-1407261_17	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1407261_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1407261_17	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1407261_18	UniRef90	UniRef90_W3AIS5	Response regulator (CheY-like receiver, AAA-type ATPase, and DNA-binding domain-containing protein)	NA
UHGV-1407261_18	eggNOG-mapper	97139.C824_02817	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1407261_18	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1407261_18	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-1407261_20	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1407261_20	UniRef90	UniRef90_A0A2Z4QA49	AP2 protein	NA
UHGV-1407261_20	eggNOG-mapper	357276.EL88_11255	NA	NA
UHGV-1407261_20	Structural annotation	PF17375	NA	NA
UHGV-1407261_21	PHROG	phrog_36029	NA	unknown function
UHGV-1407261_21	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-1407261_21	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-1407261_22	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1407261_22	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-1407261_22	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-1407261_22	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1407261_23	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-1407261_23	PHROG	phrog_56	DNA methyltransferase	other
UHGV-1407261_23	UniRef90	UniRef90_A0A396NP33	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1407261_23	eggNOG-mapper	796940.HMPREF9628_01282	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-1407261_23	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-1407261_23	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1407261_23	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-1407261_23	COG	COG0338	DNA-adenine methylase	NA
UHGV-1407261_23	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-1407261_25	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1407261_25	PHROG	phrog_95	integrase	integration and excision
UHGV-1407261_25	UniRef90	UniRef90_A0A7X7HF11	Recombinase family protein	NA
UHGV-1407261_25	eggNOG-mapper	935948.KE386495_gene1360	Resolvase, N terminal domain	NA
UHGV-1407261_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1407261_25	Pfam	PF07508	Recombinase	Recombinase
UHGV-1407261_25	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1407261_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1407261_25	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1407261_26	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-1407261_27	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1407261_27	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1407261_27	UniRef90	UniRef90_A0A350TVK1	XRE family transcriptional regulator	NA
UHGV-1407261_27	eggNOG-mapper	1033744.CAEL01000029_gene1309	Peptidase S24-like	NA
UHGV-1407261_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1407261_27	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1407261_27	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1407261_27	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1407261_28	UniRef90	UniRef90_A0A1Y4RLF1	NA	NA
UHGV-1407261_28	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-1407261_28	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1407261_29	Structural annotation	PF20385	NA	NA
UHGV-1407261_37	Structural annotation	PF01381, NF041575, COG1476	NA	NA
UHGV-1407261_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1407261_38	UniRef90	UniRef90_A0A7G9WGB2	Helix-turn-helix transcriptional regulator	NA
UHGV-1407261_38	eggNOG-mapper	457415.HMPREF1006_02520	Helix-turn-helix XRE-family like proteins	NA
UHGV-1407261_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1407261_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1407261_39	Structural annotation	PF14058	NA	NA
UHGV-1407261_40	PHROG	phrog_8470	NA	unknown function
UHGV-1407261_40	UniRef90	UniRef90_UPI001875A728	PcfJ domain-containing protein	NA
UHGV-1407261_40	eggNOG-mapper	1157490.EL26_01845	PcfJ-like protein	NA
UHGV-1407261_40	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1407261_40	Structural annotation	PF14284	NA	NA
UHGV-1407261_41	PHROG	phrog_15609	NA	unknown function
UHGV-1407261_41	UniRef90	UniRef90_UPI001875FF23	NA	NA
UHGV-1407261_41	eggNOG-mapper	1007096.BAGW01000031_gene118	NA	NA
UHGV-1407261_41	Pfam	PF11300	NA	DUF3102
UHGV-1407261_41	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-1407261_41	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-1407261_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1407261_43	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-1407261_43	eggNOG-mapper	318464.IO99_13830	NA	NA
UHGV-1407261_43	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1407261_44	PHROG	phrog_7566	NA	unknown function
UHGV-1407261_44	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-1407261_45	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1407261_45	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-1407261_45	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1407261_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1407261_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1407261_47	UniRef90	UniRef90_A0A350TVI6	Single-stranded DNA-binding protein	NA
UHGV-1407261_47	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-1407261_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1407261_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1407261_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1407261_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1407261_47	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1407261_48	Structural annotation	PF11132	NA	NA
UHGV-1407261_51	PHROG	phrog_11237	NA	unknown function
UHGV-1407261_51	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-1407261_52	UniRef90	UniRef90_A0A350U007	DNA-binding protein	NA
UHGV-1407261_52	eggNOG-mapper	1280673.AUJJ01000020_gene1343	Nucleotidyltransferase domain	NA
UHGV-1407261_52	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1407261_52	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-1407261_52	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1407261_55	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1407261_55	UniRef90	UniRef90_A0A350U006	HNH domain-containing protein	NA
UHGV-1407261_55	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-1407261_55	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1407261_55	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1407261_56	PHROG	phrog_1066	NA	unknown function
UHGV-1407261_56	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-1407261_56	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1407261_57	PHROG	phrog_10517	terminase large subunit	head and packaging
UHGV-1407261_57	UniRef90	UniRef90_A0A161Y687	Phage terminase	NA
UHGV-1407261_57	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-1407261_57	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1407261_58	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1407261_58	UniRef90	UniRef90_UPI000BF6E471	GIY-YIG nuclease family protein	NA
UHGV-1407261_58	eggNOG-mapper	1589270.A0A0B5A5V6_9CAUD	endonuclease activity	NA
UHGV-1407261_58	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1407261_58	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-1407261_59	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1407261_59	UniRef90	UniRef90_A0A350U004	Terminase large subunit	NA
UHGV-1407261_59	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-1407261_59	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1407261_59	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1407261_59	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1407261_59	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1407261_60	PHROG	phrog_12	portal protein	head and packaging
UHGV-1407261_60	UniRef90	UniRef90_A0A1T4XJH4	Phage portal protein, HK97 family	NA
UHGV-1407261_60	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-1407261_60	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1407261_60	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1407261_60	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1407261_61	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1407261_61	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1407261_61	UniRef90	UniRef90_A0A350TW16	Peptidase (Fragment)	NA
UHGV-1407261_61	eggNOG-mapper	1033738.CAEP01000167_gene3589	Serine dehydrogenase proteinase	NA
UHGV-1407261_61	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1407261_61	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1407261_61	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-1407261_62	PHROG	phrog_10	major head protein	head and packaging
UHGV-1407261_62	UniRef90	UniRef90_A0A350TW17	Phage major capsid protein (Fragment)	NA
UHGV-1407261_62	eggNOG-mapper	318464.IO99_13750	Phage major capsid protein, HK97 family	NA
UHGV-1407261_62	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1407261_62	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA