UHGV-1407816

Genome information

Genome length 28,782 bps

CDS count 41

Completeness 50.30% (medium-quality)

geNomad score 0.9744

Prediction confidence Confident

Genome information
Genome ID	UHGV-1407816
vOTU ID	vOTU-034482
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0204535
BioSample	SAMEA4431968
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9744
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.45
Jumbo phage	No

Genome content
Genome length	28,782 bps
GC content	43.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.87%
Average CDS length	646.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1407816_1	eggNOG-mapper	1002367.HMPREF0673_02172	NA	NA
UHGV-1407816_1	Structural annotation	PF21683, COG3500	NA	NA
UHGV-1407816_2	eggNOG-mapper	1002367.HMPREF0673_02173	tail tape measure protein, TP901 family	NA
UHGV-1407816_2	COG	COG5283	Phage-related tail protein	NA
UHGV-1407816_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1407816_3	PHROG	phrog_1	integrase	integration and excision
UHGV-1407816_3	UniRef90	UniRef90_A0A3R6G6V0	Transposase	NA
UHGV-1407816_3	eggNOG-mapper	449673.BACSTE_02226	Belongs to the 'phage' integrase family	NA
UHGV-1407816_3	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1407816_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1407816_3	Structural annotation	PF13102, PF17293, MF_01808, NF007246, COG4973	NA	NA
UHGV-1407816_5	PHROG	phrog_9710	NA	unknown function
UHGV-1407816_5	eggNOG-mapper	449673.BACSTE_02223	NA	NA
UHGV-1407816_6	Structural annotation	PF21577, MF_00791, NF003967, COG2967	NA	NA
UHGV-1407816_7	PHROG	phrog_17456	NA	unknown function
UHGV-1407816_8	UniRef90	UniRef90_A0A7J4XN93	Helix-turn-helix domain-containing protein	NA
UHGV-1407816_8	eggNOG-mapper	1235788.C802_00043	Helix-turn-helix XRE-family like proteins	NA
UHGV-1407816_8	Structural annotation	NF007257	NA	NA
UHGV-1407816_9	UniRef90	UniRef90_A0A415GRW5	XRE family transcriptional regulator	NA
UHGV-1407816_9	eggNOG-mapper	1235788.C802_00044	NA	NA
UHGV-1407816_9	Structural annotation	PF01381, TIGR02607, COG1476	NA	NA
UHGV-1407816_10	Structural annotation	MF_01597	NA	NA
UHGV-1407816_11	PHROG	phrog_17289	NA	unknown function
UHGV-1407816_11	UniRef90	UniRef90_A0A4U1C702	Helix-turn-helix domain-containing protein	NA
UHGV-1407816_11	eggNOG-mapper	449673.BACSTE_02217	NA	NA
UHGV-1407816_11	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-1407816_11	Structural annotation	PF11112	NA	NA
UHGV-1407816_13	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1407816_13	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1407816_13	UniRef90	UniRef90_A0A3R6G6S4	AAA_23 domain-containing protein	NA
UHGV-1407816_13	eggNOG-mapper	449673.BACSTE_02216	P-loop containing region of AAA domain	NA
UHGV-1407816_13	Pfam	PF13476	AAA domain	AAA_23
UHGV-1407816_13	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1407816_13	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1407816_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1407816_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1407816_14	UniRef90	UniRef90_A0A415GRV0	Recombinase	NA
UHGV-1407816_14	eggNOG-mapper	449673.BACSTE_02215	RecT family	NA
UHGV-1407816_14	Pfam	PF03837	RecT family	RecT
UHGV-1407816_14	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1407816_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1407816_14	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1407816_15	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1407816_15	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1407816_15	UniRef90	UniRef90_A0A3R6KB23	MBL fold metallo-hydrolase	NA
UHGV-1407816_15	eggNOG-mapper	449673.BACSTE_02214	Metallo-beta-lactamase superfamily	NA
UHGV-1407816_15	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1407816_15	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1407816_15	Structural annotation	PF02112, MF_00653, TIGR03307, COG1234	NA	NA
UHGV-1407816_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1407816_16	eggNOG-mapper	449673.BACSTE_02213	NA	NA
UHGV-1407816_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1407816_17	PHROG	phrog_11581	NA	unknown function
UHGV-1407816_17	eggNOG-mapper	449673.BACSTE_02211	NA	NA
UHGV-1407816_18	PHROG	phrog_12688	NA	unknown function
UHGV-1407816_18	eggNOG-mapper	449673.BACSTE_02210	NA	NA
UHGV-1407816_18	Structural annotation	PF10382, TIGR02276	NA	NA
UHGV-1407816_19	PHROG	phrog_11501	NA	unknown function
UHGV-1407816_19	eggNOG-mapper	449673.BACSTE_02209	NA	NA
UHGV-1407816_19	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1407816_20	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1407816_20	eggNOG-mapper	1235788.C802_00057	NA	NA
UHGV-1407816_20	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-1407816_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1407816_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1407816_21	UniRef90	UniRef90_A0A3R6FJC0	ATP-binding protein	NA
UHGV-1407816_21	eggNOG-mapper	411901.BACCAC_01187	DNA-dependent DNA replication	NA
UHGV-1407816_21	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-1407816_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1407816_21	Structural annotation	PF00308, MF_01509, NF005931, COG1484	NA	NA
UHGV-1407816_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1407816_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1407816_22	UniRef90	UniRef90_A0A4S2GCV3	Cytosine-specific methyltransferase	NA
UHGV-1407816_22	eggNOG-mapper	1121100.JCM6294_1074	C-5 cytosine-specific DNA methylase	NA
UHGV-1407816_22	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-1407816_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1407816_22	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1407816_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1407816_22	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-1407816_23	PHROG	phrog_8581	NA	unknown function
UHGV-1407816_23	eggNOG-mapper	449673.BACSTE_02205	NA	NA
UHGV-1407816_25	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1407816_25	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1407816_25	UniRef90	UniRef90_A0A415GRX6	Methyltransferase	NA
UHGV-1407816_25	eggNOG-mapper	553220.CAMGR0001_2118	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1407816_25	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1407816_25	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1407816_25	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-1407816_25	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1407816_27	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1407816_27	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1407816_27	UniRef90	UniRef90_A0A3R6I4B1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1407816_27	eggNOG-mapper	449673.BACSTE_02204	KorB domain	NA
UHGV-1407816_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1407816_27	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-1407816_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1407816_27	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1407816_29	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1407816_29	eggNOG-mapper	449673.BACSTE_02198	NA	NA
UHGV-1407816_29	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-1407816_30	PHROG	phrog_16697	NA	unknown function
UHGV-1407816_30	eggNOG-mapper	449673.BACSTE_02197	NA	NA
UHGV-1407816_31	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-1407816_31	UniRef90	UniRef90_A0A3R6JEN0	NA	NA
UHGV-1407816_31	eggNOG-mapper	449673.BACSTE_02196	ParB-like nuclease domain	NA
UHGV-1407816_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1407816_31	Pfam	PF14386	NA	DUF4417
UHGV-1407816_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1407816_31	Structural annotation	PF14386, PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-1407816_33	eggNOG-mapper	1123008.KB905702_gene2347	cell adhesion	NA
UHGV-1407816_33	COG	COG2369	NA	NA
UHGV-1407816_33	Structural annotation	PF04002, MF_00018, NF000642	NA	NA
UHGV-1407816_35	PHROG	phrog_16681	NA	unknown function
UHGV-1407816_35	UniRef90	UniRef90_R5I2U0	FHA domain-containing protein	NA
UHGV-1407816_35	eggNOG-mapper	449673.BACSTE_02195	NA	NA
UHGV-1407816_36	PHROG	phrog_18290	NA	unknown function
UHGV-1407816_36	eggNOG-mapper	449673.BACSTE_02194	NA	NA
UHGV-1407816_37	PHROG	phrog_15125	NA	unknown function
UHGV-1407816_37	eggNOG-mapper	449673.BACSTE_02193	NA	NA
UHGV-1407816_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1407816_38	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1407816_38	UniRef90	UniRef90_A0A415GRY1	Phage portal protein	NA
UHGV-1407816_38	eggNOG-mapper	449673.BACSTE_02192	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-1407816_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1407816_38	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1407816_38	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1407816_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-1407816_39	UniRef90	UniRef90_A0A415GRY9	Phage portal protein	NA
UHGV-1407816_39	eggNOG-mapper	449673.BACSTE_02191	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1407816_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1407816_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1407816_40	PHROG	phrog_25586	NA	unknown function
UHGV-1407816_40	Structural annotation	PF02170	NA	NA