UHGV-1407883

Genome information

Genome length 25,160 bps

CDS count 29

Completeness 62.35% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-1407883
vOTU ID	vOTU-031226
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0183191
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.58
Jumbo phage	No

Genome content
Genome length	25,160 bps
GC content	40.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	94.69%
Average CDS length	825.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1407883_2	UniRef90	UniRef90_A0A1C6FU84	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-1407883_2	eggNOG-mapper	1033802.SSPSH_001482	Helix-turn-helix XRE-family like proteins	NA
UHGV-1407883_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1407883_2	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1407883_2	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-1407883_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1407883_3	PHROG	phrog_435	endolysin	lysis
UHGV-1407883_3	UniRef90	UniRef90_A0A1C6E2B1	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1407883_3	eggNOG-mapper	272563.CD630_09720	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1407883_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1407883_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1407883_3	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1407883_4	PHROG	phrog_918	NA	unknown function
UHGV-1407883_4	UniRef90	UniRef90_UPI001CCDC3EB	NA	NA
UHGV-1407883_4	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-1407883_4	Pfam	PF19791	NA	DUF6275
UHGV-1407883_4	Structural annotation	PF19791	NA	NA
UHGV-1407883_5	PHROG	phrog_774	NA	unknown function
UHGV-1407883_5	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1407883_6	PHROG	phrog_37799	NA	unknown function
UHGV-1407883_6	UniRef90	UniRef90_R6NA79	Toxin secretion/phage lysis holin	NA
UHGV-1407883_6	eggNOG-mapper	272563.CD630_06610	Bacteriophage holin family	NA
UHGV-1407883_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1407883_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1407883_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1407883_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1407883_7	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1407883_7	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1407883_9	Structural annotation	TIGR03808	NA	NA
UHGV-1407883_10	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1407883_10	UniRef90	UniRef90_UPI001F2ED7B7	Abi family protein	NA
UHGV-1407883_10	eggNOG-mapper	469617.FUAG_02687	Abi-like protein	NA
UHGV-1407883_10	PADLOC	AbiD	AbiD	Abi
UHGV-1407883_10	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1407883_10	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1407883_10	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1407883_11	eggNOG-mapper	1033744.CAEL01000015_gene50	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1407883_11	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-1407883_12	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1407883_12	UniRef90	UniRef90_A0A1C6E329	Phage-related protein	NA
UHGV-1407883_12	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-1407883_12	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1407883_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1407883_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1407883_12	COG	COG4926	Phage-related protein	NA
UHGV-1407883_12	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1407883_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1407883_13	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-1407883_13	eggNOG-mapper	86416.Clopa_3365	PFAM Phage tail protein	NA
UHGV-1407883_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1407883_13	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1407883_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-1407883_13	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-1407883_14	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-1407883_14	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-1407883_14	UniRef90	UniRef90_A0A416CW06	Phage tail tape measure protein	NA
UHGV-1407883_14	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-1407883_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1407883_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1407883_14	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1407883_16	PHROG	phrog_88	major tail protein	tail
UHGV-1407883_16	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-1407883_16	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-1407883_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1407883_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1407883_17	PHROG	phrog_78	tail terminator	connector
UHGV-1407883_17	Structural annotation	PF05657	NA	NA
UHGV-1407883_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1407883_18	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-1407883_18	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-1407883_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1407883_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1407883_18	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1407883_19	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-1407883_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1407883_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1407883_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1407883_20	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-1407883_20	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-1407883_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1407883_20	Structural annotation	PF05135	NA	NA
UHGV-1407883_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-1407883_21	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1407883_21	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-1407883_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1407883_21	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1407883_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1407883_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1407883_21	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1407883_22	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1407883_22	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-1407883_22	eggNOG-mapper	1314.HKU360_01488	NA	NA
UHGV-1407883_22	Pfam	PF14265	NA	DUF4355
UHGV-1407883_22	Structural annotation	PF14265	NA	NA
UHGV-1407883_23	Structural annotation	NF041921	NA	NA
UHGV-1407883_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1407883_24	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-1407883_24	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-1407883_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1407883_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1407883_24	COG	COG2369	NA	NA
UHGV-1407883_24	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-1407883_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-1407883_25	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-1407883_25	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1407883_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1407883_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1407883_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1407883_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1407883_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1407883_26	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-1407883_26	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-1407883_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1407883_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1407883_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1407883_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-1407883_26	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1407883_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1407883_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1407883_27	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-1407883_27	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-1407883_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1407883_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1407883_27	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1407883_29	UniRef90	UniRef90_A0A7Y0EZJ9	N-6 DNA Methylase	NA
UHGV-1407883_29	eggNOG-mapper	1111134.HMPREF1253_0397	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-1407883_29	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA