UHGV-1408199

Genome information

Genome length 25,155 bps

CDS count 42

Completeness 78.06% (medium-quality)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-1408199
vOTU ID	vOTU-034490
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0183152
BioSample	SAMN02334002
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.1
Jumbo phage	No

Genome content
Genome length	25,155 bps
GC content	57.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.35%
Average CDS length	569.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1408199_1	PHROG	phrog_17572	NA	unknown function
UHGV-1408199_1	eggNOG-mapper	1122152.AUEI01000006_gene113	NA	NA
UHGV-1408199_1	AcrCatalog	cluster_25152	NA	NA
UHGV-1408199_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1408199_2	UniRef90	UniRef90_A0A4Q2K3G5	XRE family transcriptional regulator	NA
UHGV-1408199_2	eggNOG-mapper	742742.HMPREF9452_01329	Helix-turn-helix	NA
UHGV-1408199_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1408199_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1408199_2	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1408199_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1408199_3	UniRef90	UniRef90_UPI001D071C9E	helix-turn-helix transcriptional regulator	NA
UHGV-1408199_3	eggNOG-mapper	439375.Oant_0669	Helix-turn-helix XRE-family like proteins	NA
UHGV-1408199_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1408199_3	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1408199_3	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1408199_6	eggNOG-mapper	445975.COLSTE_02184	NA	NA
UHGV-1408199_9	PHROG	phrog_24189	NA	unknown function
UHGV-1408199_9	UniRef90	UniRef90_A0A4Q2K0F6	NA	NA
UHGV-1408199_9	eggNOG-mapper	445975.COLSTE_02182	NA	NA
UHGV-1408199_9	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1408199_9	Structural annotation	PF14297, TIGR01714, COG1959	NA	NA
UHGV-1408199_11	PHROG	phrog_24658	NA	unknown function
UHGV-1408199_11	UniRef90	UniRef90_R7D8J1	Gp50	NA
UHGV-1408199_13	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1408199_13	UniRef90	UniRef90_A0A4Q2K4Y8	Restriction alleviation protein, Lar family	NA
UHGV-1408199_13	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1408199_13	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1408199_13	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1408199_13	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1408199_15	PHROG	phrog_236	nucleotide kinase	other
UHGV-1408199_15	UniRef90	UniRef90_A0A4Q2K614	NA	NA
UHGV-1408199_15	eggNOG-mapper	445975.COLSTE_02179	NA	NA
UHGV-1408199_15	Pfam	PF11753	NA	DUF3310
UHGV-1408199_15	Structural annotation	PF11753	NA	NA
UHGV-1408199_18	KOfam	K14059	int; integrase	NA
UHGV-1408199_18	PHROG	phrog_1	integrase	integration and excision
UHGV-1408199_18	UniRef90	UniRef90_A0A4Q2K1M9	Site-specific integrase	NA
UHGV-1408199_18	eggNOG-mapper	445975.COLSTE_02176	Belongs to the 'phage' integrase family	NA
UHGV-1408199_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1408199_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1408199_18	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1408199_19	UniRef90	UniRef90_UPI00103173DD	integration host factor	NA
UHGV-1408199_19	eggNOG-mapper	1381751.JAJB01000023_gene1732	integration host factor	NA
UHGV-1408199_19	NCBIFam	NF041260.1	integration host factor, actinobacterial type	NA
UHGV-1408199_19	COG	COG0099	Ribosomal protein S13	NA
UHGV-1408199_19	Structural annotation	PF00416, MF_01315, NF041260, COG0099	NA	NA
UHGV-1408199_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1408199_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1408199_21	UniRef90	UniRef90_A0A414EU69	Single-stranded DNA-binding protein	NA
UHGV-1408199_21	eggNOG-mapper	1034345.CAEM01000002_gene1212	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1408199_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1408199_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1408199_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1408199_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1408199_21	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-1408199_22	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1408199_22	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1408199_22	UniRef90	UniRef90_A0A374TU31	dUTP diphosphatase	NA
UHGV-1408199_22	eggNOG-mapper	445975.COLSTE_02170	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-1408199_22	Pfam	PF00692	dUTPase	dUTPase
UHGV-1408199_22	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-1408199_22	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1408199_22	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-1408199_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1408199_23	eggNOG-mapper	445975.COLSTE_02169	NA	NA
UHGV-1408199_23	Structural annotation	PF04545, MF_00674, TIGR03879	NA	NA
UHGV-1408199_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1408199_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1408199_24	UniRef90	UniRef90_A0A4Q2K147	HNH endonuclease	NA
UHGV-1408199_24	eggNOG-mapper	445975.COLSTE_02167	endonuclease activity	NA
UHGV-1408199_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1408199_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1408199_25	PHROG	phrog_1066	NA	unknown function
UHGV-1408199_25	eggNOG-mapper	445975.COLSTE_02166	NA	NA
UHGV-1408199_25	Structural annotation	TIGR01558	NA	NA
UHGV-1408199_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1408199_26	UniRef90	UniRef90_A0A374TTV6	Terminase large subunit	NA
UHGV-1408199_26	eggNOG-mapper	445975.COLSTE_02165	Phage Terminase	NA
UHGV-1408199_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1408199_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1408199_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1408199_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1408199_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-1408199_27	UniRef90	UniRef90_A0A4Q2K609	Phage portal protein	NA
UHGV-1408199_27	eggNOG-mapper	445975.COLSTE_02164	Phage portal protein	NA
UHGV-1408199_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1408199_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1408199_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1408199_28	KOfam	K06904	NA	NA
UHGV-1408199_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1408199_28	UniRef90	UniRef90_A0A4Q2K446	HK97 family phage prohead protease	NA
UHGV-1408199_28	eggNOG-mapper	445975.COLSTE_02163	Caudovirus prohead serine protease	NA
UHGV-1408199_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1408199_28	COG	COG3740	Phage head maturation protease	NA
UHGV-1408199_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1408199_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1408199_29	UniRef90	UniRef90_A0A1Y4GBR5	Phage major capsid protein	NA
UHGV-1408199_29	eggNOG-mapper	445975.COLSTE_02162	Phage capsid family	NA
UHGV-1408199_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1408199_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1408199_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1408199_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1408199_30	PHROG	phrog_5223	neck protein	connector
UHGV-1408199_30	UniRef90	UniRef90_A0A414ETY6	DNA-packaging protein	NA
UHGV-1408199_30	eggNOG-mapper	1341151.ASZU01000004_gene259	NA	NA
UHGV-1408199_31	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1408199_31	UniRef90	UniRef90_A0A6N7RLQ4	Phage head-tail adapter protein	NA
UHGV-1408199_31	eggNOG-mapper	411471.SUBVAR_05854	NA	NA
UHGV-1408199_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1408199_32	UniRef90	UniRef90_UPI00148B2708	HK97 gp10 family phage protein	NA
UHGV-1408199_32	eggNOG-mapper	1220589.CD32_00820	NA	NA
UHGV-1408199_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1408199_33	eggNOG-mapper	887929.HMP0721_1261	NA	NA
UHGV-1408199_33	Structural annotation	PF05657	NA	NA
UHGV-1408199_34	PHROG	phrog_88	major tail protein	tail
UHGV-1408199_34	UniRef90	UniRef90_B6GDH7	Phage major tail protein, phi13 family	NA
UHGV-1408199_34	eggNOG-mapper	445975.COLSTE_02157	phage major tail protein, phi13 family	NA
UHGV-1408199_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1408199_34	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1408199_35	Structural annotation	PF12363	NA	NA
UHGV-1408199_37	PHROG	phrog_23464	NA	unknown function
UHGV-1408199_37	UniRef90	UniRef90_B6GDH5	TMP repeat protein	NA
UHGV-1408199_37	eggNOG-mapper	445975.COLSTE_02155	Phage tail tape measure protein TP901	NA
UHGV-1408199_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1408199_37	Structural annotation	COG5280	NA	NA
UHGV-1408199_38	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-1408199_38	UniRef90	UniRef90_B6GDH4	Putative phage tail component domain protein	NA
UHGV-1408199_38	eggNOG-mapper	445975.COLSTE_02154	phage tail	NA
UHGV-1408199_38	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1408199_38	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1408199_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-1408199_38	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1408199_39	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-1408199_39	UniRef90	UniRef90_A0A374TT20	Prophage_tail domain-containing protein	NA
UHGV-1408199_39	eggNOG-mapper	445975.COLSTE_02153	Prophage endopeptidase tail	NA
UHGV-1408199_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1408199_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1408199_39	COG	COG4926	Phage-related protein	NA
UHGV-1408199_39	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-1408199_40	eggNOG-mapper	398513.BBNG_00861	NA	NA
UHGV-1408199_41	PHROG	phrog_19280	NA	unknown function
UHGV-1408199_41	UniRef90	UniRef90_A0A414EU89	NA	NA
UHGV-1408199_41	eggNOG-mapper	445975.COLSTE_02151	NA	NA
UHGV-1408199_41	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1408199_41	Structural annotation	PF10651	NA	NA
UHGV-1408199_42	PHROG	phrog_17147	NA	unknown function
UHGV-1408199_42	eggNOG-mapper	1680.BADO_1222	NA	NA