UHGV-1408232

Genome information

Genome length 28,610 bps

CDS count 48

Completeness 63.38% (medium-quality)

geNomad score 0.9830

Prediction confidence Confident

Genome information
Genome ID	UHGV-1408232
vOTU ID	vOTU-034492
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0203579
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9830
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.87
Jumbo phage	No

Genome content
Genome length	28,610 bps
GC content	40.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.42%
Average CDS length	549.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1408232_1	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-1408232_1	COG	COG1511	NA	NA
UHGV-1408232_2	PHROG	phrog_706	NA	unknown function
UHGV-1408232_2	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-1408232_2	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-1408232_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1408232_2	Structural annotation	PF06854	NA	NA
UHGV-1408232_3	PHROG	phrog_11299	NA	unknown function
UHGV-1408232_3	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-1408232_3	Structural annotation	PF10666	NA	NA
UHGV-1408232_4	PHROG	phrog_3099	NA	unknown function
UHGV-1408232_4	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-1408232_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1408232_5	PHROG	phrog_3266	tail completion	connector
UHGV-1408232_5	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-1408232_5	Structural annotation	PF12691	NA	NA
UHGV-1408232_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1408232_6	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-1408232_6	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1408232_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1408232_6	Structural annotation	PF11114	NA	NA
UHGV-1408232_7	PHROG	phrog_3366	NA	unknown function
UHGV-1408232_7	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-1408232_7	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1408232_8	PHROG	phrog_1129	holin	lysis
UHGV-1408232_8	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-1408232_8	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1408232_8	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1408232_8	Structural annotation	PF06946	NA	NA
UHGV-1408232_9	PHROG	phrog_774	NA	unknown function
UHGV-1408232_9	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1408232_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1408232_10	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-1408232_11	PHROG	phrog_544	major head protein	head and packaging
UHGV-1408232_11	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-1408232_11	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-1408232_11	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1408232_11	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1408232_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1408232_12	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-1408232_12	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-1408232_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1408232_13	PHROG	phrog_28802	NA	unknown function
UHGV-1408232_13	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1408232_14	PHROG	phrog_20016	NA	unknown function
UHGV-1408232_14	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1408232_14	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1408232_14	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1408232_15	PHROG	phrog_16490	NA	unknown function
UHGV-1408232_15	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1408232_16	PHROG	phrog_22984	NA	unknown function
UHGV-1408232_17	PHROG	phrog_21718	NA	unknown function
UHGV-1408232_17	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1408232_18	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-1408232_18	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-1408232_19	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1408232_19	UniRef90	UniRef90_UPI0015D4DC00	NUMOD4 domain-containing protein	NA
UHGV-1408232_19	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-1408232_19	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1408232_19	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1408232_19	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1408232_19	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1408232_19	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1408232_20	PHROG	phrog_3754	NA	unknown function
UHGV-1408232_20	UniRef90	UniRef90_A0A7U3NK13	Putative peptidase	NA
UHGV-1408232_20	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1408232_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1408232_21	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-1408232_21	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-1408232_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1408232_21	COG	COG2369	NA	NA
UHGV-1408232_21	Structural annotation	PF06152	NA	NA
UHGV-1408232_22	eggNOG-mapper	743722.Sph21_3460	NA	NA
UHGV-1408232_22	Structural annotation	PF01522, TIGR02873, COG0726	NA	NA
UHGV-1408232_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-1408232_23	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-1408232_23	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-1408232_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1408232_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1408232_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1408232_24	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-1408232_24	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1408232_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1408232_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1408232_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1408232_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1408232_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1408232_25	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1408232_25	UniRef90	UniRef90_A0A075KJD6	Putative truncated GIY-YIG endonuclease	NA
UHGV-1408232_25	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-1408232_25	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1408232_25	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-1408232_26	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1408232_26	UniRef90	UniRef90_A0A8J6P944	Helix-turn-helix domain-containing protein	NA
UHGV-1408232_26	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-1408232_26	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1408232_26	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1408232_26	Structural annotation	PF07141	NA	NA
UHGV-1408232_29	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-1408232_31	Structural annotation	PF06107, COG4481	NA	NA
UHGV-1408232_32	PHROG	phrog_20593	NA	unknown function
UHGV-1408232_33	UniRef90	UniRef90_R7QYD6	DNA-directed RNA polymerase subunit alpha	NA
UHGV-1408232_33	eggNOG-mapper	1232449.BAHV02000010_gene2470	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-1408232_33	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-1408232_33	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-1408232_33	Structural annotation	PF03118, NF005841	NA	NA
UHGV-1408232_35	PHROG	phrog_924	NA	unknown function
UHGV-1408232_35	UniRef90	UniRef90_A0A2V2D7Q1	NA	NA
UHGV-1408232_35	eggNOG-mapper	272556.CF65_01837	Response regulators consisting of a CheY-like receiver domain and a	NA
UHGV-1408232_35	Pfam	PF04448	NA	DUF551
UHGV-1408232_35	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-1408232_36	PHROG	phrog_4601	NA	unknown function
UHGV-1408232_36	Structural annotation	PF17888	NA	NA
UHGV-1408232_37	Structural annotation	NF041070	NA	NA
UHGV-1408232_38	PHROG	phrog_17690	NA	unknown function
UHGV-1408232_38	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-1408232_39	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-1408232_39	eggNOG-mapper	37659.JNLN01000001_gene2302	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1408232_39	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-1408232_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1408232_39	Structural annotation	PF01726, COG0640	NA	NA
UHGV-1408232_41	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-1408232_41	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-1408232_41	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-1408232_41	eggNOG-mapper	1121333.JMLH01000003_gene334	PIF1-like helicase	NA
UHGV-1408232_41	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-1408232_41	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-1408232_41	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1408232_41	Structural annotation	PF05970, PF18350, MF_03176, TIGR02768, COG0507	NA	NA
UHGV-1408232_42	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1408232_42	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-1408232_42	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-1408232_42	Pfam	PF06048	NA	DUF927
UHGV-1408232_42	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1408232_42	COG	COG5519	NA	NA
UHGV-1408232_42	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1408232_43	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1408232_43	PHROG	phrog_11992	NA	unknown function
UHGV-1408232_43	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-1408232_43	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-1408232_43	PADLOC	drt-UG29	DRT	DRT
UHGV-1408232_43	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1408232_43	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1408232_43	Structural annotation	PF01807, PF00401	NA	NA
UHGV-1408232_44	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1408232_44	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-1408232_44	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-1408232_44	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1408232_44	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1408232_45	PHROG	phrog_18107	NA	unknown function
UHGV-1408232_45	eggNOG-mapper	397290.C810_05167	NA	NA
UHGV-1408232_45	Structural annotation	PF05037	NA	NA
UHGV-1408232_46	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1408232_46	UniRef90	UniRef90_UPI0011CB4DA4	AAA family ATPase	NA
UHGV-1408232_46	eggNOG-mapper	1415774.U728_1119	AAA domain	NA
UHGV-1408232_46	Pfam	PF13479	AAA domain	AAA_24
UHGV-1408232_46	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1408232_47	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1408232_47	UniRef90	UniRef90_A0A1H0H3E1	HNH endonuclease	NA
UHGV-1408232_47	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-1408232_47	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1408232_47	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1408232_47	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1408232_47	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1408232_48	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA