UHGV-1408635

Genome information

Genome length 25,347 bps

CDS count 45

Completeness 62.70% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-1408635
vOTU ID	vOTU-021028
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0184417
BioSample	SAMEA4545479
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.85
Jumbo phage	No

Genome content
Genome length	25,347 bps
GC content	51.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	88.52%
Average CDS length	502.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1408635_1	PHROG	phrog_38832	NA	unknown function
UHGV-1408635_3	PHROG	phrog_22543	NA	unknown function
UHGV-1408635_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1408635_10	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1408635_10	UniRef90	UniRef90_A0A4D7AZ70	PBSX family phage terminase large subunit	NA
UHGV-1408635_10	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-1408635_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1408635_10	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1408635_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1408635_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-1408635_10	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1408635_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-1408635_11	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-1408635_11	eggNOG-mapper	332101.JIBU02000023_gene4816	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1408635_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1408635_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1408635_12	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1408635_12	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-1408635_12	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1408635_12	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1408635_12	COG	COG2369	NA	NA
UHGV-1408635_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1408635_13	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-1408635_13	eggNOG-mapper	764299.STRIC_1434	NA	NA
UHGV-1408635_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1408635_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1408635_14	Structural annotation	PF18152	NA	NA
UHGV-1408635_16	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-1408635_16	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-1408635_16	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1408635_16	Structural annotation	PF10723	NA	NA
UHGV-1408635_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1408635_17	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1408635_17	Structural annotation	PF06810	NA	NA
UHGV-1408635_18	PHROG	phrog_544	major head protein	head and packaging
UHGV-1408635_18	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1408635_18	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1408635_18	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1408635_19	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-1408635_21	PHROG	phrog_17977	NA	unknown function
UHGV-1408635_21	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-1408635_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1408635_22	Structural annotation	PF11367	NA	NA
UHGV-1408635_23	PHROG	phrog_885	major tail protein	tail
UHGV-1408635_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1408635_23	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1408635_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1408635_24	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-1408635_25	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1408635_25	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1408635_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1408635_26	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1408635_27	PHROG	phrog_6616	tail protein	tail
UHGV-1408635_27	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-1408635_27	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-1408635_28	PHROG	phrog_1980	tail fiber protein	tail
UHGV-1408635_28	UniRef90	UniRef90_A0A856HZ25	Tail fiber domain-containing protein	NA
UHGV-1408635_28	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-1408635_28	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1408635_28	Structural annotation	PF07902, NF041249	NA	NA
UHGV-1408635_30	UniRef90	UniRef90_UPI0019579426	collagen-like protein	NA
UHGV-1408635_30	COG	COG1511	NA	NA
UHGV-1408635_31	UniRef90	UniRef90_A0A4D7AHL6	Collagen-like protein	NA
UHGV-1408635_31	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-1408635_32	eggNOG-mapper	1226322.HMPREF1545_00128	NA	NA
UHGV-1408635_33	PHROG	phrog_2310	NA	unknown function
UHGV-1408635_34	PHROG	phrog_937	hemolysin	other
UHGV-1408635_34	eggNOG-mapper	445972.ANACOL_03381	NA	NA
UHGV-1408635_36	PHROG	phrog_1129	holin	lysis
UHGV-1408635_36	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-1408635_36	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1408635_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1408635_36	Structural annotation	PF06946	NA	NA
UHGV-1408635_37	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1408635_37	PHROG	phrog_670	endolysin	lysis
UHGV-1408635_37	UniRef90	UniRef90_U2SBT6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1408635_37	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-1408635_37	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1408635_37	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1408635_37	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1408635_38	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-1408635_38	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-1408635_39	PHROG	phrog_1281	NA	unknown function
UHGV-1408635_39	UniRef90	UniRef90_A0A0W7TLZ5	NA	NA
UHGV-1408635_39	eggNOG-mapper	1235798.C817_03619	NA	NA
UHGV-1408635_39	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1408635_39	COG	COG3600	NA	NA
UHGV-1408635_39	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1408635_41	PHROG	phrog_3754	NA	unknown function
UHGV-1408635_41	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1408635_42	PHROG	phrog_21718	NA	unknown function
UHGV-1408635_42	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-1408635_42	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1408635_43	PHROG	phrog_22984	NA	unknown function
UHGV-1408635_44	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1408635_44	UniRef90	UniRef90_UPI001C3801D7	NUMOD4 domain-containing protein	NA
UHGV-1408635_44	eggNOG-mapper	324831.LGAS_0604	NUMOD1 domain	NA
UHGV-1408635_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1408635_44	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1408635_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1408635_44	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1408635_45	PHROG	phrog_16490	NA	unknown function
UHGV-1408635_45	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA