UHGV-1408799

Genome information

Genome length 25,287 bps

CDS count 34

Completeness 63.53% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-1408799
vOTU ID	vOTU-034499
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0184007
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.26
Jumbo phage	No

Genome content
Genome length	25,287 bps
GC content	52.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	89.17%
Average CDS length	666.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1408799_1	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-1408799_1	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-1408799_1	Structural annotation	PF13542	NA	NA
UHGV-1408799_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1408799_2	PHROG	phrog_10250	NA	unknown function
UHGV-1408799_2	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-1408799_2	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-1408799_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1408799_2	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1408799_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1408799_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-1408799_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1408799_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-1408799_3	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-1408799_3	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-1408799_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1408799_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1408799_4	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1408799_4	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-1408799_4	eggNOG-mapper	1111135.HMPREF1248_0663	cell adhesion	NA
UHGV-1408799_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1408799_4	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1408799_4	COG	COG2369	NA	NA
UHGV-1408799_4	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1408799_5	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1408799_5	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-1408799_5	eggNOG-mapper	386415.NT01CX_2170	NA	NA
UHGV-1408799_5	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1408799_5	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1408799_6	Structural annotation	PF18152	NA	NA
UHGV-1408799_7	PHROG	phrog_1233	NA	unknown function
UHGV-1408799_7	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-1408799_7	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-1408799_8	Structural annotation	PF06810	NA	NA
UHGV-1408799_9	PHROG	phrog_544	major head protein	head and packaging
UHGV-1408799_9	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1408799_9	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1408799_9	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1408799_11	PHROG	phrog_17977	NA	unknown function
UHGV-1408799_11	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-1408799_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1408799_12	PHROG	phrog_17405	head protein	head and packaging
UHGV-1408799_12	Structural annotation	PF11367	NA	NA
UHGV-1408799_13	PHROG	phrog_885	major tail protein	tail
UHGV-1408799_13	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-1408799_13	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1408799_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1408799_15	PHROG	phrog_7115	NA	unknown function
UHGV-1408799_15	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-1408799_15	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-1408799_15	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-1408799_15	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-1408799_16	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1408799_16	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1408799_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1408799_16	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-1408799_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1408799_17	UniRef90	UniRef90_A0A374UNT1	MtfA protein	NA
UHGV-1408799_17	eggNOG-mapper	877414.ATWA01000019_gene2049	NA	NA
UHGV-1408799_17	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1408799_18	PHROG	phrog_3558	tail protein	tail
UHGV-1408799_18	UniRef90	UniRef90_A0A4Q7PKS7	Phage minor structural protein	NA
UHGV-1408799_18	eggNOG-mapper	1235800.C819_02223	Prophage endopeptidase tail	NA
UHGV-1408799_18	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1408799_18	COG	COG4926	Phage-related protein	NA
UHGV-1408799_18	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-1408799_19	PHROG	phrog_372	tail protein	tail
UHGV-1408799_19	UniRef90	UniRef90_A0A1C5RHT6	Phage-related holin (Lysis protein)	NA
UHGV-1408799_19	eggNOG-mapper	1235796.C815_00905	NA	NA
UHGV-1408799_19	Pfam	PF05895	NA	DUF859
UHGV-1408799_20	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1408799_20	UniRef90	UniRef90_A0A075KJD6	Putative truncated GIY-YIG endonuclease	NA
UHGV-1408799_20	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-1408799_21	PHROG	phrog_1863	NA	unknown function
UHGV-1408799_21	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-1408799_21	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-1408799_22	PHROG	phrog_881	holin	lysis
UHGV-1408799_22	UniRef90	UniRef90_UPI00189D3A4F	phage holin	NA
UHGV-1408799_22	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1408799_22	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1408799_22	Structural annotation	PF16938	NA	NA
UHGV-1408799_23	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1408799_23	PHROG	phrog_435	endolysin	lysis
UHGV-1408799_23	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1408799_23	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1408799_23	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1408799_23	Pfam	PF05036	SPOR domain	SPOR
UHGV-1408799_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1408799_23	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1408799_25	UniRef90	UniRef90_A0A847E3M6	Ribbon-helix-helix protein, CopG family	NA
UHGV-1408799_25	eggNOG-mapper	595536.ADVE02000001_gene2685	NA	NA
UHGV-1408799_25	Pfam	PF07878	CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5	RHH_5
UHGV-1408799_25	COG	COG4453	NA	NA
UHGV-1408799_25	Structural annotation	PF03869, NF010256, COG4877	NA	NA
UHGV-1408799_27	PHROG	phrog_3754	NA	unknown function
UHGV-1408799_27	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1408799_28	PHROG	phrog_21718	NA	unknown function
UHGV-1408799_28	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1408799_29	PHROG	phrog_22984	NA	unknown function
UHGV-1408799_30	PHROG	phrog_16490	NA	unknown function
UHGV-1408799_30	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1408799_31	PHROG	phrog_20016	NA	unknown function
UHGV-1408799_31	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1408799_31	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1408799_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1408799_32	Structural annotation	PF12510	NA	NA
UHGV-1408799_33	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-1408799_34	KOfam	K14059	int; integrase	NA
UHGV-1408799_34	PHROG	phrog_1	integrase	integration and excision
UHGV-1408799_34	UniRef90	UniRef90_A0A810Q0L1	Tyr recombinase domain-containing protein	NA
UHGV-1408799_34	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-1408799_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1408799_34	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1408799_34	Structural annotation	PF00589, MF_01808, NF040815, COG0582	NA	NA