UHGV-1408960

Genome information

Genome length 25,250 bps

CDS count 39

Completeness 68.87% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1408960
vOTU ID	vOTU-034502
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0183780
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.36
Jumbo phage	No

Genome content
Genome length	25,250 bps
GC content	59.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	95.64%
Average CDS length	621.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1408960_2	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1408960_2	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-1408960_2	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-1408960_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1408960_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1408960_3	PHROG	phrog_1066	NA	unknown function
UHGV-1408960_3	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-1408960_3	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1408960_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1408960_4	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-1408960_4	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-1408960_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1408960_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1408960_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1408960_4	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1408960_5	PHROG	phrog_12	portal protein	head and packaging
UHGV-1408960_5	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-1408960_5	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-1408960_5	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1408960_5	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1408960_5	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1408960_6	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1408960_6	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1408960_6	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-1408960_6	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-1408960_6	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1408960_6	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1408960_6	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1408960_7	PHROG	phrog_10	major head protein	head and packaging
UHGV-1408960_7	UniRef90	UniRef90_A0A355RXP5	Phage major capsid protein	NA
UHGV-1408960_7	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-1408960_7	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1408960_7	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1408960_7	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1408960_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1408960_8	PHROG	phrog_5223	neck protein	connector
UHGV-1408960_8	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-1408960_8	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-1408960_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1408960_9	UniRef90	UniRef90_UPI001B02B074	phage head closure protein	NA
UHGV-1408960_9	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-1408960_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1408960_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1408960_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1408960_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1408960_10	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-1408960_10	Structural annotation	PF05657	NA	NA
UHGV-1408960_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1408960_11	Structural annotation	TIGR01725	NA	NA
UHGV-1408960_12	PHROG	phrog_88	major tail protein	tail
UHGV-1408960_12	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-1408960_12	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-1408960_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1408960_12	COG	COG5492	NA	NA
UHGV-1408960_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1408960_13	Structural annotation	PF11836	NA	NA
UHGV-1408960_14	PHROG	phrog_33680	NA	unknown function
UHGV-1408960_14	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-1408960_14	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-1408960_14	COG	COG5283	Phage-related tail protein	NA
UHGV-1408960_14	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1408960_15	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-1408960_15	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1408960_15	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-1408960_15	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-1408960_16	PHROG	phrog_26795	NA	unknown function
UHGV-1408960_16	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-1408960_16	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1408960_17	Structural annotation	PF18614, MF_00085, NF003076, COG0231	NA	NA
UHGV-1408960_19	Structural annotation	PF10651	NA	NA
UHGV-1408960_21	PHROG	phrog_10898	NA	unknown function
UHGV-1408960_21	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-1408960_21	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-1408960_21	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-1408960_21	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-1408960_22	Structural annotation	PF16408, NF033510	NA	NA
UHGV-1408960_23	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-1408960_23	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1408960_25	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-1408960_25	Structural annotation	PF10618	NA	NA
UHGV-1408960_27	PHROG	phrog_937	hemolysin	other
UHGV-1408960_28	PHROG	phrog_443	holin	lysis
UHGV-1408960_28	UniRef90	UniRef90_A0A4R1QPE5	Phage r1t holin	NA
UHGV-1408960_28	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-1408960_28	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1408960_28	Structural annotation	PF16945	NA	NA
UHGV-1408960_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1408960_29	PHROG	phrog_1794	amidase	lysis
UHGV-1408960_29	UniRef90	UniRef90_N1ZHY5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1408960_29	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-1408960_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1408960_29	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1408960_29	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1408960_31	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-1408960_31	Structural annotation	PF10723	NA	NA
UHGV-1408960_32	PHROG	phrog_6160	NA	unknown function
UHGV-1408960_32	eggNOG-mapper	314345.SPV1_06379	NA	NA
UHGV-1408960_39	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1408960_39	PHROG	phrog_95	integrase	integration and excision
UHGV-1408960_39	UniRef90	UniRef90_G9YSD9	Resolvase protein	NA
UHGV-1408960_39	eggNOG-mapper	1121344.JHZO01000001_gene439	resolvase	NA
UHGV-1408960_39	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1408960_39	Pfam	PF07508	Recombinase	Recombinase
UHGV-1408960_39	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1408960_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1408960_39	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA