UHGV-1410012

Genome information

Genome length 25,072 bps

CDS count 44

Completeness 59.30% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-1410012
vOTU ID	vOTU-023108
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0182608
BioSample	SAMN00791924
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.35
Jumbo phage	No

Genome content
Genome length	25,072 bps
GC content	53.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.56%
Average CDS length	539.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1410012_1	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-1410012_3	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1410012_3	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-1410012_3	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-1410012_3	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1410012_3	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1410012_3	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1410012_3	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1410012_4	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1410012_4	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1410012_4	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-1410012_4	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-1410012_4	Pfam	PF03837	RecT family	RecT
UHGV-1410012_4	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1410012_4	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1410012_4	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1410012_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1410012_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1410012_5	UniRef90	UniRef90_R5SNS5	Single-stranded DNA-binding protein	NA
UHGV-1410012_5	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-1410012_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1410012_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1410012_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1410012_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1410012_5	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1410012_7	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1410012_7	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-1410012_7	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-1410012_7	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1410012_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1410012_7	Structural annotation	PF14297	NA	NA
UHGV-1410012_8	PHROG	phrog_9804	NA	unknown function
UHGV-1410012_8	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-1410012_8	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-1410012_8	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1410012_8	Structural annotation	PF11417	NA	NA
UHGV-1410012_9	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1410012_9	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-1410012_9	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-1410012_9	Pfam	PF06356	NA	DUF1064
UHGV-1410012_9	Structural annotation	PF06356	NA	NA
UHGV-1410012_11	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1410012_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1410012_11	eggNOG-mapper	33876.JNXY01000005_gene8728	Helix-turn-helix XRE-family like proteins	NA
UHGV-1410012_11	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1410012_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1410012_11	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-1410012_11	Structural annotation	PF01381, PF13744, NF041951, COG3655, COG2944	NA	NA
UHGV-1410012_12	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1410012_12	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-1410012_12	UniRef90	UniRef90_A0A1Q6T6B8	Methyltransferase	NA
UHGV-1410012_12	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-1410012_12	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1410012_12	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1410012_12	COG	COG0863	DNA modification methylase	NA
UHGV-1410012_12	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1410012_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1410012_13	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1410012_14	PHROG	phrog_27610	NA	unknown function
UHGV-1410012_15	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-1410012_15	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-1410012_16	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-1410012_17	PHROG	phrog_38832	NA	unknown function
UHGV-1410012_17	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-1410012_18	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1410012_18	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1410012_18	UniRef90	UniRef90_A0A1M6HP95	Restriction alleviation protein, Lar family	NA
UHGV-1410012_18	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1410012_18	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1410012_18	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1410012_18	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1410012_21	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-1410012_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1410012_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1410012_23	UniRef90	UniRef90_UPI001D05F697	terminase small subunit	NA
UHGV-1410012_23	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-1410012_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1410012_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1410012_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1410012_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1410012_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1410012_24	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1410012_24	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1410012_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1410012_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1410012_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1410012_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-1410012_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1410012_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-1410012_25	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-1410012_25	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1410012_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1410012_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1410012_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1410012_26	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-1410012_26	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1410012_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1410012_26	COG	COG2369	NA	NA
UHGV-1410012_26	Structural annotation	PF06152	NA	NA
UHGV-1410012_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1410012_28	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-1410012_28	eggNOG-mapper	1423790.BN53_04440	Phage minor structural protein GP20	NA
UHGV-1410012_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1410012_28	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1410012_29	PHROG	phrog_212	major head protein	head and packaging
UHGV-1410012_29	UniRef90	UniRef90_A0A354MR33	Phage capsid protein	NA
UHGV-1410012_29	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-1410012_29	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1410012_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1410012_30	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1410012_31	PHROG	phrog_3366	NA	unknown function
UHGV-1410012_31	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1410012_31	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1410012_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1410012_32	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-1410012_32	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1410012_32	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1410012_32	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1410012_33	PHROG	phrog_3266	tail completion	connector
UHGV-1410012_33	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1410012_33	Structural annotation	PF12691	NA	NA
UHGV-1410012_34	PHROG	phrog_3099	NA	unknown function
UHGV-1410012_34	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-1410012_34	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-1410012_35	PHROG	phrog_11299	NA	unknown function
UHGV-1410012_35	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1410012_35	Structural annotation	PF10666	NA	NA
UHGV-1410012_36	PHROG	phrog_706	NA	unknown function
UHGV-1410012_36	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1410012_36	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1410012_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1410012_36	Structural annotation	PF06854	NA	NA
UHGV-1410012_37	PHROG	phrog_806	NA	unknown function
UHGV-1410012_37	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-1410012_37	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-1410012_37	Pfam	PF11611	NA	DUF4352
UHGV-1410012_37	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-1410012_38	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1410012_38	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1410012_38	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-1410012_38	COG	COG1511	NA	NA
UHGV-1410012_38	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1410012_39	PHROG	phrog_1194	NA	unknown function
UHGV-1410012_39	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-1410012_39	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1410012_40	PHROG	phrog_32308	NA	unknown function
UHGV-1410012_40	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-1410012_40	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-1410012_40	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-1410012_41	UniRef90	UniRef90_UPI00195E70AD	tail fiber domain-containing protein	NA
UHGV-1410012_41	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-1410012_41	Structural annotation	PF14594	NA	NA
UHGV-1410012_42	eggNOG-mapper	529884.Rhola_00002520	regulation of response to stimulus	NA
UHGV-1410012_42	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-1410012_42	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1410012_42	Structural annotation	PF21605, NF041825, COG3198	NA	NA