UHGV-1410368

Genome information

Genome length 25,229 bps

CDS count 38

Completeness 59.51% (medium-quality)

geNomad score 0.9831

Prediction confidence Confident

Genome information
Genome ID	UHGV-1410368
vOTU ID	vOTU-030247
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0183645
BioSample	SAMN05414945
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9831
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.1
Jumbo phage	No

Genome content
Genome length	25,229 bps
GC content	51.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	92.33%
Average CDS length	615.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1410368_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1410368_1	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1410368_1	UniRef90	UniRef90_A0A6L5TDR3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1410368_1	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1410368_1	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1410368_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1410368_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1410368_1	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-1410368_4	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-1410368_8	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-1410368_8	UniRef90	UniRef90_UPI00164DE10C	helix-turn-helix domain-containing protein	NA
UHGV-1410368_8	eggNOG-mapper	1301100.HG529387_gene5110	Putative sugar diacid recognition	NA
UHGV-1410368_8	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-1410368_8	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-1410368_8	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-1410368_9	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-1410368_10	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1410368_10	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-1410368_10	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-1410368_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1410368_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1410368_11	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1410368_11	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1410368_11	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-1410368_11	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-1410368_11	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1410368_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1410368_11	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1410368_11	COG	COG0863	DNA modification methylase	NA
UHGV-1410368_11	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1410368_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1410368_14	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1410368_14	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1410368_14	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-1410368_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1410368_14	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1410368_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1410368_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-1410368_14	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1410368_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-1410368_15	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-1410368_15	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1410368_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1410368_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1410368_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1410368_16	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-1410368_16	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1410368_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1410368_16	COG	COG2369	NA	NA
UHGV-1410368_16	Structural annotation	PF06152	NA	NA
UHGV-1410368_18	Structural annotation	PF18152	NA	NA
UHGV-1410368_19	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-1410368_19	Structural annotation	PF06810	NA	NA
UHGV-1410368_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-1410368_20	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-1410368_20	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1410368_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1410368_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1410368_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1410368_20	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1410368_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1410368_21	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1410368_22	PHROG	phrog_3366	NA	unknown function
UHGV-1410368_22	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1410368_22	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1410368_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1410368_23	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-1410368_23	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1410368_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1410368_23	Structural annotation	PF11114	NA	NA
UHGV-1410368_24	PHROG	phrog_3266	tail completion	connector
UHGV-1410368_24	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1410368_24	Structural annotation	PF12691	NA	NA
UHGV-1410368_25	PHROG	phrog_3099	NA	unknown function
UHGV-1410368_25	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-1410368_25	Structural annotation	TIGR02126	NA	NA
UHGV-1410368_26	PHROG	phrog_11299	NA	unknown function
UHGV-1410368_26	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1410368_26	Structural annotation	PF10666	NA	NA
UHGV-1410368_27	PHROG	phrog_706	NA	unknown function
UHGV-1410368_27	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-1410368_27	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1410368_27	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1410368_27	Structural annotation	PF06854	NA	NA
UHGV-1410368_29	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1410368_29	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-1410368_29	Pfam	PF13488	Glycine zipper	Gly-zipper_Omp
UHGV-1410368_29	COG	COG1511	NA	NA
UHGV-1410368_29	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1410368_30	PHROG	phrog_1194	NA	unknown function
UHGV-1410368_30	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-1410368_30	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1410368_31	PHROG	phrog_13879	NA	unknown function
UHGV-1410368_31	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-1410368_31	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1410368_32	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-1410368_33	Structural annotation	PF00354	NA	NA
UHGV-1410368_34	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-1410368_36	PHROG	phrog_1382	NA	unknown function
UHGV-1410368_37	PHROG	phrog_1863	NA	unknown function
UHGV-1410368_37	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-1410368_38	PHROG	phrog_13256	NA	unknown function
UHGV-1410368_38	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA