UHGV-1410548

Genome information

Genome length 25,003 bps

CDS count 39

Completeness 73.17% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-1410548
vOTU ID	vOTU-034360
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0182141
BioSample	SAMEA2737980
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.82
Jumbo phage	No

Genome content
Genome length	25,003 bps
GC content	39.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	92.94%
Average CDS length	599.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1410548_2	Structural annotation	NF007883	NA	NA
UHGV-1410548_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1410548_4	UniRef90	UniRef90_UPI001D06B209	siphovirus Gp157 family protein	NA
UHGV-1410548_4	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-1410548_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1410548_4	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1410548_5	PHROG	phrog_14970	NA	unknown function
UHGV-1410548_5	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-1410548_5	eggNOG-mapper	428127.EUBDOL_01248	double-strand break repair protein	NA
UHGV-1410548_5	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1410548_5	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1410548_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1410548_6	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-1410548_6	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1410548_7	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1410548_7	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1410548_7	UniRef90	UniRef90_UPI001D092C21	HNH endonuclease	NA
UHGV-1410548_7	eggNOG-mapper	1280689.AUJC01000011_gene1516	endonuclease activity	NA
UHGV-1410548_7	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1410548_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1410548_7	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1410548_8	PHROG	phrog_1163	NA	unknown function
UHGV-1410548_8	UniRef90	UniRef90_UPI001D075DB7	conserved phage C-terminal domain-containing protein	NA
UHGV-1410548_8	eggNOG-mapper	1206110.L0P704_9CAUD	calcium ion binding	NA
UHGV-1410548_8	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1410548_8	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1410548_8	Structural annotation	PF09524, PF09681, TIGR02220, TIGR01714	NA	NA
UHGV-1410548_9	PHROG	phrog_9804	NA	unknown function
UHGV-1410548_9	eggNOG-mapper	1273103.NM10_01154	NA	NA
UHGV-1410548_9	Structural annotation	PF11417	NA	NA
UHGV-1410548_10	PHROG	phrog_5070	NA	unknown function
UHGV-1410548_10	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-1410548_10	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1410548_10	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-1410548_10	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1410548_10	Structural annotation	NF040481	NA	NA
UHGV-1410548_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1410548_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1410548_11	UniRef90	UniRef90_UPI001D0945F7	single-stranded DNA-binding protein	NA
UHGV-1410548_11	eggNOG-mapper	879309.HMPREF9199_0149	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1410548_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1410548_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1410548_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1410548_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1410548_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1410548_13	PHROG	phrog_2882	DNA methyltransferase	other
UHGV-1410548_13	UniRef90	UniRef90_UPI000E75FDEB	DNA methyltransferase	NA
UHGV-1410548_13	eggNOG-mapper	565653.EGBG_01954	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1410548_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1410548_15	PHROG	phrog_21026	NA	unknown function
UHGV-1410548_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1410548_16	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1410548_16	UniRef90	UniRef90_UPI001D065A38	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1410548_16	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-1410548_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1410548_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1410548_17	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1410548_17	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1410548_17	UniRef90	UniRef90_UPI001D07D29E	dUTP diphosphatase	NA
UHGV-1410548_17	eggNOG-mapper	66692.ABC2847	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1410548_17	Pfam	PF00692	dUTPase	dUTPase
UHGV-1410548_17	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-1410548_17	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1410548_17	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1410548_18	PHROG	phrog_3878	NA	unknown function
UHGV-1410548_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1410548_19	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-1410548_19	eggNOG-mapper	706434.HMPREF9429_00383	NA	NA
UHGV-1410548_19	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1410548_21	UniRef90	UniRef90_A0A847PRP4	Helix-turn-helix transcriptional regulator	NA
UHGV-1410548_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1410548_21	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1410548_21	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-1410548_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1410548_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1410548_24	UniRef90	UniRef90_UPI001D073EE5	terminase small subunit	NA
UHGV-1410548_24	eggNOG-mapper	1280689.AUJC01000003_gene961	Terminase small subunit	NA
UHGV-1410548_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1410548_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1410548_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1410548_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1410548_25	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1410548_25	UniRef90	UniRef90_UPI001D07F325	phage terminase large subunit	NA
UHGV-1410548_25	eggNOG-mapper	1121091.AUMP01000003_gene2581	Terminase-like family	NA
UHGV-1410548_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1410548_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-1410548_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1410548_27	PHROG	phrog_156	portal protein	head and packaging
UHGV-1410548_27	UniRef90	UniRef90_F7NK66	Putative phage portal protein	NA
UHGV-1410548_27	eggNOG-mapper	401526.TcarDRAFT_1284	Tfp pilus assembly protein FimV	NA
UHGV-1410548_27	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-1410548_27	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1410548_30	PHROG	phrog_334	major head protein	head and packaging
UHGV-1410548_30	UniRef90	UniRef90_UPI000E723A53	N4-gp56 family major capsid protein	NA
UHGV-1410548_30	eggNOG-mapper	401526.TcarDRAFT_1286	NA	NA
UHGV-1410548_30	Pfam	PF13252	NA	DUF4043
UHGV-1410548_30	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1410548_30	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1410548_31	Structural annotation	PF20387	NA	NA
UHGV-1410548_32	Structural annotation	PF20387	NA	NA
UHGV-1410548_33	eggNOG-mapper	1485543.JMME01000005_gene872	NA	NA
UHGV-1410548_33	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-1410548_34	Structural annotation	PF20747	NA	NA
UHGV-1410548_36	Structural annotation	PF11039, MF_00084, NF000482, COG3818	NA	NA
UHGV-1410548_37	UniRef90	UniRef90_UPI001D07B8A4	Hint domain-containing protein	NA
UHGV-1410548_37	eggNOG-mapper	1123288.SOV_4c02760	NA	NA
UHGV-1410548_37	Pfam	PF13403	Hint domain	Hint_2
UHGV-1410548_37	Structural annotation	PF07591, NF038136, TIGR03017, COG4942	NA	NA