UHGV-1410959

Genome information

Genome length 43,436 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-1410959
vOTU ID	vOTU-068318
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0286223
BioSample	SAMN02333973
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.27
Jumbo phage	No

Genome content
Genome length	43,436 bps
GC content	42.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.81%
Average CDS length	684.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1410959_2	PHROG	phrog_774	NA	unknown function
UHGV-1410959_2	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1410959_3	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-1410959_3	Pfam	PF19789	NA	DUF6273
UHGV-1410959_3	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-1410959_3	Structural annotation	PF19789, PF13620, NF033708	NA	NA
UHGV-1410959_5	PHROG	phrog_17196	kinase	other
UHGV-1410959_5	eggNOG-mapper	1232449.BAHV02000016_gene1815	NA	NA
UHGV-1410959_6	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1410959_6	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-1410959_6	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-1410959_7	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-1410959_7	Structural annotation	PF20387, NF038128, COG5156	NA	NA
UHGV-1410959_9	PHROG	phrog_371	major head protein	head and packaging
UHGV-1410959_9	UniRef90	UniRef90_UPI001F183EB8	Mu-like prophage major head subunit gpT family protein	NA
UHGV-1410959_9	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-1410959_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1410959_10	PHROG	phrog_24113	NA	unknown function
UHGV-1410959_10	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1410959_10	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1410959_14	PHROG	phrog_156	portal protein	head and packaging
UHGV-1410959_14	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-1410959_14	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1410959_15	PHROG	phrog_24361	terminase	head and packaging
UHGV-1410959_15	UniRef90	UniRef90_R6ELB5	Putative terminase large subunit	NA
UHGV-1410959_15	eggNOG-mapper	693746.OBV_23980	phage Terminase large subunit	NA
UHGV-1410959_15	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1410959_15	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1410959_16	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1410959_16	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1410959_16	UniRef90	UniRef90_UPI000A177B61	terminase small subunit	NA
UHGV-1410959_16	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-1410959_16	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1410959_16	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1410959_16	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1410959_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1410959_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1410959_19	UniRef90	UniRef90_A0A3R6DF97	Cytosine-specific methyltransferase	NA
UHGV-1410959_19	eggNOG-mapper	180332.JTGN01000023_gene1615	Cytosine-specific methyltransferase	NA
UHGV-1410959_19	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1410959_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1410959_19	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1410959_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1410959_19	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1410959_23	eggNOG-mapper	1235799.C818_02666	NA	NA
UHGV-1410959_25	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1410959_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1410959_25	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-1410959_25	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1410959_25	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1410959_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1410959_25	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-1410959_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1410959_31	UniRef90	UniRef90_A0A7C7D529	Sigma70_r4 domain-containing protein	NA
UHGV-1410959_31	eggNOG-mapper	1211035.CD30_08135	NA	NA
UHGV-1410959_31	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1410959_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1410959_31	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1410959_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1410959_32	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1410959_32	UniRef90	UniRef90_A0A7C6XX43	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1410959_32	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-1410959_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1410959_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1410959_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1410959_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1410959_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1410959_33	UniRef90	UniRef90_R6E0A2	Single-stranded DNA-binding protein	NA
UHGV-1410959_33	eggNOG-mapper	883109.HMPREF0380_00268	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1410959_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1410959_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1410959_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1410959_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1410959_33	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1410959_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1410959_34	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1410959_34	UniRef90	UniRef90_A0A396Q1C9	Methyltransferase	NA
UHGV-1410959_34	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-1410959_34	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1410959_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1410959_34	COG	COG0863	DNA modification methylase	NA
UHGV-1410959_34	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1410959_36	eggNOG-mapper	760568.Desku_0913	NA	NA
UHGV-1410959_37	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1410959_37	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1410959_37	UniRef90	UniRef90_A0A373ZM52	Bac_DnaA domain-containing protein	NA
UHGV-1410959_37	eggNOG-mapper	428125.CLOLEP_01820	NA	NA
UHGV-1410959_37	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-1410959_37	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1410959_37	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1410959_38	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1410959_38	UniRef90	UniRef90_UPI001E517B3D	helix-turn-helix domain-containing protein	NA
UHGV-1410959_38	eggNOG-mapper	1151292.QEW_3765	DnaD domain protein	NA
UHGV-1410959_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1410959_39	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1410959_39	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-1410959_40	PHROG	phrog_7566	NA	unknown function
UHGV-1410959_40	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-1410959_41	PHROG	phrog_11717	NA	unknown function
UHGV-1410959_41	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-1410959_41	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1410959_42	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1410959_42	UniRef90	UniRef90_UPI00082E9619	siphovirus Gp157 family protein	NA
UHGV-1410959_42	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-1410959_42	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1410959_42	Structural annotation	PF05565	NA	NA
UHGV-1410959_44	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1410959_44	eggNOG-mapper	742823.HMPREF9465_00229	NA	NA
UHGV-1410959_44	Structural annotation	PF18337	NA	NA
UHGV-1410959_46	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1410959_46	UniRef90	UniRef90_R6DPB3	Putative Cell wall hydrolase	NA
UHGV-1410959_46	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-1410959_46	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-1410959_47	PHROG	phrog_6058	NA	unknown function
UHGV-1410959_47	eggNOG-mapper	742823.HMPREF9465_00186	NA	NA
UHGV-1410959_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1410959_48	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1410959_48	UniRef90	UniRef90_A0A7X9EDY6	Helix-turn-helix transcriptional regulator	NA
UHGV-1410959_48	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-1410959_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1410959_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1410959_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1410959_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1410959_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1410959_49	UniRef90	UniRef90_A0A2A2ILD6	HTH cro/C1-type domain-containing protein	NA
UHGV-1410959_49	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1410959_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1410959_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1410959_49	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1410959_51	KOfam	K14059	int; integrase	NA
UHGV-1410959_51	PHROG	phrog_1	integrase	integration and excision
UHGV-1410959_51	UniRef90	UniRef90_A0A6N7X4W3	Site-specific integrase	NA
UHGV-1410959_51	eggNOG-mapper	1238184.CM001792_gene62	Phage integrase family	NA
UHGV-1410959_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1410959_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1410959_51	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1410959_52	PHROG	phrog_3292	NA	unknown function
UHGV-1410959_52	UniRef90	UniRef90_A0A2W4W708	KTSC domain-containing protein	NA
UHGV-1410959_52	eggNOG-mapper	179408.Osc7112_5076	KTSC domain	NA
UHGV-1410959_52	Pfam	PF13619	KTSC domain	KTSC
UHGV-1410959_52	COG	COG4249	NA	NA
UHGV-1410959_52	Structural annotation	PF13619	NA	NA
UHGV-1410959_55	PHROG	phrog_22978	NA	unknown function
UHGV-1410959_55	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA
UHGV-1410959_55	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-1410959_55	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1410959_57	eggNOG-mapper	1280681.AUJZ01000045_gene2512	NA	NA
UHGV-1410959_59	PHROG	phrog_1863	NA	unknown function
UHGV-1410959_59	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-1410959_60	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1410959_60	PHROG	phrog_435	endolysin	lysis
UHGV-1410959_60	UniRef90	UniRef90_A0A7T8C4D6	Endolysin	NA
UHGV-1410959_60	eggNOG-mapper	10724.ENLYS_BPSPP	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1410959_60	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1410959_60	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1410959_60	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA