UHGV-1411366

Genome information

vOTU vOTU-020971

Genome length 16,417 bps

CDS count 21

Completeness 84.18% (medium-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-1411366
vOTU ID	vOTU-020971
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0110243
BioSample	SAMEA3541471
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.59
Jumbo phage	No

Genome content
Genome length	16,417 bps
GC content	35.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	90.69%
Average CDS length	709.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1411366_3	Structural annotation	PF17548	NA	NA
UHGV-1411366_5	Structural annotation	PF17548	NA	NA
UHGV-1411366_6	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1411366_6	Structural annotation	PF17427	NA	NA
UHGV-1411366_8	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1411366_8	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1411366_8	UniRef90	UniRef90_A0A349YIS3	DNA-directed DNA polymerase (Fragment)	NA
UHGV-1411366_8	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-1411366_8	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1411366_8	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1411366_9	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-1411366_9	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-1411366_9	UniRef90	UniRef90_A0A349YIS4	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-1411366_9	eggNOG-mapper	1450694.BTS2_3268	Deoxyuridine 5'-triphosphate	NA
UHGV-1411366_9	Pfam	PF00692	dUTPase	dUTPase
UHGV-1411366_9	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1411366_9	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-1411366_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-1411366_10	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-1411366_10	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1411366_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1411366_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1411366_11	PHROG	phrog_199	holin	lysis
UHGV-1411366_11	UniRef90	UniRef90_A0A843HKJ8	Phage holin family protein	NA
UHGV-1411366_11	eggNOG-mapper	877414.ATWA01000062_gene1614	Bacteriophage holin family	NA
UHGV-1411366_11	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1411366_11	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1411366_11	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1411366_12	eggNOG-mapper	411459.RUMOBE_01085	NA	NA
UHGV-1411366_12	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1411366_12	Structural annotation	PF01471	NA	NA
UHGV-1411366_13	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-1411366_13	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-1411366_13	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1411366_13	COG	COG3942	Surface antigen	NA
UHGV-1411366_13	Structural annotation	PF18013	NA	NA
UHGV-1411366_16	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1411366_16	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-1411366_16	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-1411366_16	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1411366_18	PHROG	phrog_2248	tail protein	tail
UHGV-1411366_18	UniRef90	UniRef90_A0A843HKP3	Caud_tail_N domain-containing protein	NA
UHGV-1411366_18	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-1411366_18	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1411366_18	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1411366_18	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1411366_19	PHROG	phrog_2038	upper collar connector	connector
UHGV-1411366_19	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-1411366_19	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-1411366_19	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1411366_19	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1411366_20	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1411366_20	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-1411366_20	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-1411366_21	PHROG	phrog_16164	NA	unknown function
UHGV-1411366_21	Structural annotation	PF16255, COG2845	NA	NA