UHGV-1411426

Genome information

vOTU vOTU-019052

Genome length 16,126 bps

CDS count 24

Completeness 68.07% (medium-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-1411426
vOTU ID	vOTU-019052
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0106503
BioSample	SAMN00792023
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.68
Jumbo phage	No

Genome content
Genome length	16,126 bps
GC content	35.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	94.80%
Average CDS length	641.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1411426_2	Structural annotation	NF040877	NA	NA
UHGV-1411426_5	Structural annotation	PF17548	NA	NA
UHGV-1411426_6	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1411426_6	UniRef90	UniRef90_A0A345BNN7	Single-stranded DNA-binding protein	NA
UHGV-1411426_6	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1411426_6	Structural annotation	PF17427	NA	NA
UHGV-1411426_7	Structural annotation	PF05435	NA	NA
UHGV-1411426_8	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1411426_8	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1411426_8	UniRef90	UniRef90_A0A1W7M4V8	DNA-directed DNA polymerase	NA
UHGV-1411426_8	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1411426_8	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1411426_8	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1411426_9	PHROG	phrog_2150	terminase	head and packaging
UHGV-1411426_9	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1411426_9	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1411426_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-1411426_10	UniRef90	UniRef90_A0A843HWD4	Phage DNA encapsidation protein	NA
UHGV-1411426_10	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1411426_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1411426_10	Structural annotation	PF05894, MF_04148	NA	NA
UHGV-1411426_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1411426_12	UniRef90	UniRef90_A0A843GX77	Ig-like domain-containing protein	NA
UHGV-1411426_12	eggNOG-mapper	12345.CAPSD_BPGA1	T=13 icosahedral viral capsid	NA
UHGV-1411426_12	Structural annotation	PF21703, MF_04119, NF033394, COG1659	NA	NA
UHGV-1411426_13	PHROG	phrog_2248	tail protein	tail
UHGV-1411426_13	UniRef90	UniRef90_A0A843HQG9	Caud_tail_N domain-containing protein	NA
UHGV-1411426_13	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-1411426_13	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1411426_13	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1411426_13	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1411426_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-1411426_14	UniRef90	UniRef90_I3PV47	Connector protein	NA
UHGV-1411426_14	eggNOG-mapper	1309583.M4W5Z5_9CAUD	Phage Connector (GP10)	NA
UHGV-1411426_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1411426_14	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1411426_15	PHROG	phrog_199	holin	lysis
UHGV-1411426_15	UniRef90	UniRef90_UPI00051BAB0A	phage holin family protein	NA
UHGV-1411426_15	eggNOG-mapper	1449050.JNLE01000003_gene3874	Bacteriophage holin family	NA
UHGV-1411426_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1411426_15	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1411426_15	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1411426_15	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1411426_16	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1411426_16	PHROG	phrog_670	endolysin	lysis
UHGV-1411426_16	UniRef90	UniRef90_A0A843HW29	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1411426_16	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1411426_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1411426_16	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1411426_16	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1411426_17	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1411426_17	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-1411426_19	Structural annotation	NF038126	NA	NA
UHGV-1411426_20	Structural annotation	PF00804	NA	NA