UHGV-1413602

Genome information

vOTU vOTU-020763

Genome length 16,395 bps

CDS count 23

Completeness 82.88% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-1413602
vOTU ID	vOTU-020763
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0109980
BioSample	SAMN02334243
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.88% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.54
Jumbo phage	No

Genome content
Genome length	16,395 bps
GC content	32.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	87.90%
Average CDS length	627.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1413602_1	KOfam	K01051	E3.1.1.11; pectinesterase [EC:3.1.1.11]	NA
UHGV-1413602_1	UniRef90	UniRef90_A0A7G9G5K5	Pectinesterase domain-containing protein	NA
UHGV-1413602_1	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-1413602_3	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1413602_3	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-1413602_3	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-1413602_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-1413602_4	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-1413602_4	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-1413602_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1413602_4	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1413602_5	PHROG	phrog_2248	tail protein	tail
UHGV-1413602_5	UniRef90	UniRef90_A0A843HUB8	Caud_tail_N domain-containing protein	NA
UHGV-1413602_5	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-1413602_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1413602_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1413602_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1413602_6	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1413602_6	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-1413602_6	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-1413602_6	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1413602_6	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1413602_8	PHROG	phrog_11037	NA	unknown function
UHGV-1413602_8	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-1413602_8	eggNOG-mapper	641107.CDLVIII_3773	heme binding	NA
UHGV-1413602_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1413602_8	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1413602_8	Structural annotation	PF18013	NA	NA
UHGV-1413602_9	PHROG	phrog_14030	NA	unknown function
UHGV-1413602_9	UniRef90	UniRef90_A0A2A7MEX2	Autolytic lysozyme	NA
UHGV-1413602_9	eggNOG-mapper	877411.JMMA01000002_gene948	NlpC/P60 family	NA
UHGV-1413602_9	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1413602_9	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1413602_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1413602_9	Structural annotation	PF01471, PF05382, NF038080, NF033742, COG3409, COG0791	NA	NA
UHGV-1413602_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-1413602_11	UniRef90	UniRef90_A0A843GSD8	Phage DNA encapsidation protein	NA
UHGV-1413602_11	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1413602_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1413602_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1413602_12	Structural annotation	NF007780, COG1544	NA	NA
UHGV-1413602_13	Structural annotation	PF12021	NA	NA
UHGV-1413602_16	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1413602_16	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1413602_16	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-1413602_16	eggNOG-mapper	10747.DPOL_BPCP1	nucleotide binding	NA
UHGV-1413602_16	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1413602_16	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1413602_18	Structural annotation	PF17427	NA	NA
UHGV-1413602_19	Structural annotation	PF17548	NA	NA
UHGV-1413602_22	Structural annotation	PF17548	NA	NA