UHGV-1413728

Genome information

Genome length 53,313 bps

CDS count 40

Completeness 73.78% (medium-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-1413728
vOTU ID	vOTU-034596
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0318220
BioSample	SAMN02333929
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.27
Jumbo phage	No

Genome content
Genome length	53,313 bps
GC content	44.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	94.55%
Average CDS length	1,263.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1413728_2	UniRef90	UniRef90_A0A6N2XIS2	Helix-turn-helix domain protein	NA
UHGV-1413728_2	eggNOG-mapper	411476.BACOVA_02995	NA	NA
UHGV-1413728_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1413728_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1413728_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1413728_3	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-1413728_4	PHROG	phrog_15610	protease	other
UHGV-1413728_4	eggNOG-mapper	688246.Premu_0381	NA	NA
UHGV-1413728_7	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1413728_7	UniRef90	UniRef90_UPI00192482D4	terminase	NA
UHGV-1413728_7	eggNOG-mapper	1347393.HG726020_gene1832	Mu-like prophage FluMu protein gp28	NA
UHGV-1413728_7	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-1413728_7	Structural annotation	PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1413728_8	PHROG	phrog_32516	NA	unknown function
UHGV-1413728_8	eggNOG-mapper	1121098.HMPREF1534_01101	NA	NA
UHGV-1413728_8	Structural annotation	PF11134, COG2706	NA	NA
UHGV-1413728_11	PHROG	phrog_32423	NA	unknown function
UHGV-1413728_11	eggNOG-mapper	435591.BDI_0903	NA	NA
UHGV-1413728_12	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-1413728_12	PHROG	phrog_7	endolysin	lysis
UHGV-1413728_12	UniRef90	UniRef90_A0A096BIF3	Lysozyme	NA
UHGV-1413728_12	eggNOG-mapper	679190.HMPREF0650_1968	lysozyme	NA
UHGV-1413728_12	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-1413728_12	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1413728_12	HAMAP	MF_04110	Endolysin	NA
UHGV-1413728_12	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-1413728_13	eggNOG-mapper	226186.BT_4444	NA	NA
UHGV-1413728_14	PHROG	phrog_10691	NA	unknown function
UHGV-1413728_14	eggNOG-mapper	1121441.AUCX01000032_gene3179	Methyltransferase small domain	NA
UHGV-1413728_14	Pfam	PF18827	Large polyvalent protein-associated domain 14	LPD14
UHGV-1413728_14	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1413728_14	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-1413728_14	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-1413728_16	Pfam	PF01694	Rhomboid family	Rhomboid
UHGV-1413728_16	Structural annotation	PF01694, MF_01594, TIGR04239, COG0705	NA	NA
UHGV-1413728_17	Structural annotation	PF02368	NA	NA
UHGV-1413728_19	PHROG	phrog_156	portal protein	head and packaging
UHGV-1413728_19	eggNOG-mapper	1347393.HG726020_gene1833	NA	NA
UHGV-1413728_19	Structural annotation	PF16510, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1413728_20	PHROG	phrog_22323	NA	unknown function
UHGV-1413728_20	eggNOG-mapper	1347393.HG726020_gene1830	NA	NA
UHGV-1413728_21	PHROG	phrog_26635	NA	unknown function
UHGV-1413728_21	Structural annotation	PF17236, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1413728_23	Structural annotation	PF17212	NA	NA
UHGV-1413728_24	PHROG	phrog_22546	NA	unknown function
UHGV-1413728_24	eggNOG-mapper	1121098.HMPREF1534_01963	Phage minor structural protein	NA
UHGV-1413728_24	Pfam	PF07902	gp58-like protein	Gp58
UHGV-1413728_24	COG	COG4926	Phage-related protein	NA
UHGV-1413728_25	eggNOG-mapper	762968.HMPREF9441_03608	NA	NA
UHGV-1413728_26	PHROG	phrog_17134	NA	unknown function
UHGV-1413728_26	eggNOG-mapper	1235803.C825_03435	translation initiation factor activity	NA
UHGV-1413728_26	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1413728_27	PHROG	phrog_5302	tail protein	tail
UHGV-1413728_27	Structural annotation	COG1262	NA	NA
UHGV-1413728_28	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1413728_28	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1413728_28	UniRef90	UniRef90_A0A3A9JPT0	Reverse transcriptase	NA
UHGV-1413728_28	eggNOG-mapper	1031288.AXAA01000043_gene1778	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1413728_28	PADLOC	drt-UG17	DRT	DRT
UHGV-1413728_28	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1413728_29	UniRef90	UniRef90_A0A414ZEY4	NA	NA
UHGV-1413728_29	eggNOG-mapper	411479.BACUNI_00733	NA	NA
UHGV-1413728_29	Pfam	PF14301	NA	DUF4376
UHGV-1413728_29	Structural annotation	PF14301	NA	NA
UHGV-1413728_30	Structural annotation	PF08299, NF004688	NA	NA
UHGV-1413728_31	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-1413728_32	UniRef90	UniRef90_A0A7M1RY91	Nuclear pore complex-like protein	NA
UHGV-1413728_34	Structural annotation	PF20338	NA	NA
UHGV-1413728_35	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1413728_35	eggNOG-mapper	1122992.CBQQ010000072_gene1965	NA	NA
UHGV-1413728_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1413728_36	UniRef90	UniRef90_UPI000380F061	recombination protein NinB	NA
UHGV-1413728_36	eggNOG-mapper	679189.HMPREF9019_0912	NA	NA
UHGV-1413728_36	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1413728_37	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1413728_37	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1413728_37	UniRef90	UniRef90_A0A379GAG2	Ribonuclease Z	NA
UHGV-1413728_37	eggNOG-mapper	1392486.JIAF01000004_gene2638	NA	NA
UHGV-1413728_37	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1413728_37	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1413728_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1413728_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1413728_38	UniRef90	UniRef90_A0A3R6PLT7	Recombinase	NA
UHGV-1413728_38	eggNOG-mapper	449673.BACSTE_02215	RecT family	NA
UHGV-1413728_38	Pfam	PF03837	RecT family	RecT
UHGV-1413728_38	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1413728_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1413728_38	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1413728_39	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1413728_39	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1413728_39	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-1413728_39	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-1413728_39	PADLOC	AAA_15	NA	NA
UHGV-1413728_39	Pfam	PF13476	AAA domain	AAA_23
UHGV-1413728_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1413728_39	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1413728_40	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-1413728_40	UniRef90	UniRef90_J9GPW1	NA	NA
UHGV-1413728_40	eggNOG-mapper	1366055.S5MLS6_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-1413728_40	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-1413728_40	Structural annotation	PF18909, PF08141, MF_00667, TIGR02861	NA	NA