UHGV-1414210

Genome information

Genome length 43,275 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-1414210
vOTU ID	vOTU-065416
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0285488
BioSample	SAMN02333950
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.57
Jumbo phage	No

Genome content
Genome length	43,275 bps
GC content	47.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	95.44%
Average CDS length	729.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1414210_1	UniRef90	UniRef90_A0A352SIQ1	HTH cro/C1-type domain-containing protein	NA
UHGV-1414210_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1414210_1	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1414210_5	PHROG	phrog_6058	NA	unknown function
UHGV-1414210_5	UniRef90	UniRef90_A0A101WT85	Modification methylase SinI	NA
UHGV-1414210_5	eggNOG-mapper	1462527.CCDM010000010_gene482	NA	NA
UHGV-1414210_5	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-1414210_10	PHROG	phrog_14970	NA	unknown function
UHGV-1414210_10	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-1414210_10	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-1414210_10	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1414210_10	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1414210_10	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1414210_11	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1414210_11	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1414210_11	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1414210_11	Pfam	PF05772	NinB protein	NinB
UHGV-1414210_11	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1414210_12	PHROG	phrog_7566	NA	unknown function
UHGV-1414210_12	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-1414210_12	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-1414210_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1414210_13	UniRef90	UniRef90_UPI00164AE2A5	NA	NA
UHGV-1414210_13	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-1414210_13	Pfam	PF06356	NA	DUF1064
UHGV-1414210_13	Structural annotation	PF06356	NA	NA
UHGV-1414210_14	PHROG	phrog_15768	NA	unknown function
UHGV-1414210_14	eggNOG-mapper	1121344.JHZO01000003_gene982	NA	NA
UHGV-1414210_14	Pfam	PF19808	NA	DUF6291
UHGV-1414210_14	Structural annotation	PF19808	NA	NA
UHGV-1414210_15	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1414210_15	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1414210_15	UniRef90	UniRef90_R6RCD0	Putative phosphoadenosine phosphosulfate reductase	NA
UHGV-1414210_15	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1414210_15	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1414210_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1414210_15	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1414210_16	PHROG	phrog_4973	NA	unknown function
UHGV-1414210_16	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-1414210_16	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-1414210_16	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-1414210_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1414210_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1414210_18	UniRef90	UniRef90_R7EVC4	Single-stranded DNA-binding protein	NA
UHGV-1414210_18	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-1414210_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1414210_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1414210_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1414210_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1414210_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1414210_23	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1414210_23	UniRef90	UniRef90_A0A2X1TU17	Restriction alleviation and modification protein	NA
UHGV-1414210_23	eggNOG-mapper	269482.Bcep1808_1151	NA	NA
UHGV-1414210_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1414210_23	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1414210_23	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1414210_23	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1414210_26	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-1414210_26	UniRef90	UniRef90_A0A2Z4QA35	Putative radical SAM domain protein	NA
UHGV-1414210_26	eggNOG-mapper	1235798.C817_03186	NA	NA
UHGV-1414210_26	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-1414210_26	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-1414210_28	UniRef90	UniRef90_A0A3C0NNN3	HTH psq-type domain-containing protein	NA
UHGV-1414210_29	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1414210_29	UniRef90	UniRef90_A0A172JIG4	HNH homing endonuclease	NA
UHGV-1414210_29	eggNOG-mapper	767806.D7PQ37_9CAUD	HNH endonuclease	NA
UHGV-1414210_29	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1414210_29	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1414210_29	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1414210_29	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-1414210_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1414210_31	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1414210_31	UniRef90	UniRef90_A0A3C0NMI6	Terminase-like family protein	NA
UHGV-1414210_31	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1414210_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1414210_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1414210_31	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1414210_32	PHROG	phrog_156	portal protein	head and packaging
UHGV-1414210_32	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1414210_32	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1414210_33	KOfam	K07584	NA	NA
UHGV-1414210_33	PHROG	phrog_4478	peptidase	other
UHGV-1414210_33	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1414210_33	COG	COG2868	NA	NA
UHGV-1414210_33	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-1414210_34	PHROG	phrog_13908	NA	unknown function
UHGV-1414210_34	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1414210_35	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1414210_35	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-1414210_35	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1414210_35	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1414210_35	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1414210_37	PHROG	phrog_12105	NA	unknown function
UHGV-1414210_37	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-1414210_38	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1414210_38	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-1414210_38	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1414210_40	PHROG	phrog_2649	endolysin	lysis
UHGV-1414210_40	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1414210_40	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1414210_41	PHROG	phrog_22978	NA	unknown function
UHGV-1414210_41	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1414210_41	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1414210_43	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1414210_43	PHROG	phrog_26246	tail protein	tail
UHGV-1414210_43	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1414210_45	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1414210_46	COG	COG0095	Lipoate-protein ligase A	NA
UHGV-1414210_46	Structural annotation	PF04017, MF_01602, NF010922, COG0095	NA	NA
UHGV-1414210_47	eggNOG-mapper	1243664.CAVL020000006_gene4861	GDSL-like Lipase/Acylhydrolase	NA
UHGV-1414210_47	Pfam	PF00657	GDSL-like Lipase/Acylhydrolase	Lipase_GDSL
UHGV-1414210_47	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1414210_51	PHROG	phrog_881	holin	lysis
UHGV-1414210_51	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-1414210_51	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1414210_51	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1414210_51	Structural annotation	PF16938	NA	NA
UHGV-1414210_52	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1414210_52	PHROG	phrog_435	endolysin	lysis
UHGV-1414210_52	UniRef90	UniRef90_A0A3D2AA77	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1414210_52	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1414210_52	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1414210_52	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1414210_52	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1414210_53	KOfam	K14059	int; integrase	NA
UHGV-1414210_53	PHROG	phrog_1	integrase	integration and excision
UHGV-1414210_53	UniRef90	UniRef90_A0A6S6QQG1	Tyr recombinase domain-containing protein	NA
UHGV-1414210_53	eggNOG-mapper	697329.Rumal_2496	Belongs to the 'phage' integrase family	NA
UHGV-1414210_53	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1414210_53	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1414210_53	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-1414210_54	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-1414210_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1414210_55	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-1414210_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1414210_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1414210_57	UniRef90	UniRef90_A0A415G6W1	XRE family transcriptional regulator	NA
UHGV-1414210_57	eggNOG-mapper	1415775.U729_2578	Helix-turn-helix XRE-family like proteins	NA
UHGV-1414210_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1414210_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1414210_57	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA