UHGV-1414337

Genome information

Genome length 43,529 bps

CDS count 57

Completeness 99.90% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-1414337
vOTU ID	vOTU-067906
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0286626
BioSample	SAMEA2738059
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.73
Jumbo phage	No

Genome content
Genome length	43,529 bps
GC content	62.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	89.59%
Average CDS length	689.26 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1414337_6	PHROG	phrog_236	nucleotide kinase	other
UHGV-1414337_6	Pfam	PF11753	NA	DUF3310
UHGV-1414337_8	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1414337_8	UniRef90	UniRef90_A0A5J6TU15	ERF family ssDNA binding protein	NA
UHGV-1414337_8	eggNOG-mapper	1086751.G3ME42_9CAUD	ERF superfamily	NA
UHGV-1414337_8	Pfam	PF04404	ERF superfamily	ERF
UHGV-1414337_8	Structural annotation	PF04404, MF_00984, TIGR00607, COG5055	NA	NA
UHGV-1414337_9	PHROG	phrog_5168	NA	unknown function
UHGV-1414337_10	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1414337_10	UniRef90	UniRef90_UPI001865DE73	HNH endonuclease	NA
UHGV-1414337_10	eggNOG-mapper	1340709.S5W0K5_9CAUD	HNH endonuclease	NA
UHGV-1414337_16	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1414337_16	UniRef90	UniRef90_G3M5E8	Holliday junction resolvase	NA
UHGV-1414337_16	eggNOG-mapper	1203568.HMPREF1484_00227	NA	NA
UHGV-1414337_16	Structural annotation	COG1591	NA	NA
UHGV-1414337_17	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1414337_17	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1414337_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1414337_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1414337_18	UniRef90	UniRef90_UPI001555899C	single-stranded DNA-binding protein	NA
UHGV-1414337_18	eggNOG-mapper	521393.JH806633_gene1261	Single-strand binding protein family	NA
UHGV-1414337_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1414337_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1414337_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1414337_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1414337_18	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1414337_23	PHROG	phrog_284	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1414337_23	UniRef90	UniRef90_A0A2Z5HCT1	Exonuclease	NA
UHGV-1414337_23	eggNOG-mapper	1156844.KB891852_gene3727	NA	NA
UHGV-1414337_23	Structural annotation	PF12850, PF01047, MF_00325, NF003118, COG1311	NA	NA
UHGV-1414337_24	PHROG	phrog_2131	NA	unknown function
UHGV-1414337_25	Structural annotation	NF033675	NA	NA
UHGV-1414337_26	Structural annotation	PF03422, NF033675	NA	NA
UHGV-1414337_27	Pfam	PF12138	Spherulation-specific family 4	Spherulin4
UHGV-1414337_27	Structural annotation	PF12138, MF_00418, NF006945, COG0329	NA	NA
UHGV-1414337_28	Structural annotation	PF13620, TIGR02423	NA	NA
UHGV-1414337_30	PHROG	phrog_443	holin	lysis
UHGV-1414337_30	UniRef90	UniRef90_A0A7T0PDU3	Holin	NA
UHGV-1414337_30	eggNOG-mapper	1203190.CAJP01000005_gene1682	Putative lactococcus lactis phage r1t holin	NA
UHGV-1414337_30	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1414337_30	Structural annotation	PF16945	NA	NA
UHGV-1414337_31	KOfam	K07273	acm; lysozyme	NA
UHGV-1414337_31	PHROG	phrog_291	endolysin	lysis
UHGV-1414337_31	UniRef90	UniRef90_U1RWY8	Glycosyl hydrolase family 25	NA
UHGV-1414337_31	eggNOG-mapper	1329250.WOSG25_031550	Lyzozyme M1	NA
UHGV-1414337_31	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1414337_31	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1414337_31	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1414337_33	Structural annotation	PF07902, PF14400, NF012201	NA	NA
UHGV-1414337_34	KOfam	K20269	rhiB; rhizosphere induced protein	NA
UHGV-1414337_34	PHROG	phrog_9116	tail protein	tail
UHGV-1414337_34	UniRef90	UniRef90_UPI00082CA96C	tail fiber protein	NA
UHGV-1414337_34	eggNOG-mapper	1313421.JHBV01000014_gene3894	Tail Collar domain protein	NA
UHGV-1414337_34	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1414337_34	COG	COG4675	Phage tail collar domain	NA
UHGV-1414337_34	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1414337_35	UniRef90	UniRef90_A0A2G1PH73	Fibronectin type-III domain-containing protein	NA
UHGV-1414337_35	eggNOG-mapper	78346.BRUM_0385	cellulase activity	NA
UHGV-1414337_35	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1414337_35	COG	COG4372	NA	NA
UHGV-1414337_35	Structural annotation	PF14594, PF00041, PF16323, MF_04116, NF033848, COG3500, COG3401	NA	NA
UHGV-1414337_36	Structural annotation	PF20195, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1414337_37	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1414337_37	eggNOG-mapper	525246.HMPREF0058_0754	tape measure	NA
UHGV-1414337_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1414337_39	PHROG	phrog_117	major tail protein	tail
UHGV-1414337_39	UniRef90	UniRef90_UPI001E4900BB	Ig-like domain-containing protein	NA
UHGV-1414337_39	eggNOG-mapper	251221.35210773	self proteolysis	NA
UHGV-1414337_39	Pfam	PF01833	IPT/TIG domain	TIG
UHGV-1414337_39	COG	COG1372	Intein/homing endonuclease	NA
UHGV-1414337_39	Structural annotation	PF01833, PF04630, TIGR01603, COG3353, COG5437	NA	NA
UHGV-1414337_40	Structural annotation	PF16807	NA	NA
UHGV-1414337_41	Pfam	PF17395	NA	DUF5403
UHGV-1414337_41	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1414337_42	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1414337_43	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1414337_43	UniRef90	UniRef90_UPI0019D1AD01	Gp19/Gp15/Gp42 family protein	NA
UHGV-1414337_43	eggNOG-mapper	68170.KL590469_gene1552	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1414337_43	Pfam	PF09355	NA	Phage_Gp19
UHGV-1414337_43	Structural annotation	PF09355	NA	NA
UHGV-1414337_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-1414337_44	UniRef90	UniRef90_UPI001E419B4C	phage major capsid protein	NA
UHGV-1414337_44	eggNOG-mapper	525246.HMPREF0058_0746	Phage capsid family	NA
UHGV-1414337_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1414337_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1414337_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1414337_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1414337_46	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1414337_46	eggNOG-mapper	1223542.GM1_030_00630	NA	NA
UHGV-1414337_47	PHROG	phrog_104	portal protein	head and packaging
UHGV-1414337_47	UniRef90	UniRef90_W1VBN6	Gp14 family protein	NA
UHGV-1414337_47	eggNOG-mapper	525246.HMPREF0058_0742	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1414337_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1414337_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1414337_48	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1414337_48	UniRef90	UniRef90_C0W4E7	Putative phage terminase, large subunit	NA
UHGV-1414337_48	eggNOG-mapper	525246.HMPREF0058_0741	Terminase	NA
UHGV-1414337_48	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-1414337_48	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-1414337_48	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1414337_48	Structural annotation	PF05203, PF20441, PF03354, MF_04146, MF_01420, NF005852, TIGR01547, COG4626, COG1372	NA	NA
UHGV-1414337_49	PHROG	phrog_226	minor tail protein	tail
UHGV-1414337_49	eggNOG-mapper	525246.HMPREF0058_0740	NA	NA
UHGV-1414337_54	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1414337_54	UniRef90	UniRef90_UPI00161D5ADA	helix-turn-helix domain-containing protein	NA
UHGV-1414337_54	eggNOG-mapper	1123227.KB899338_gene1073	NA	NA
UHGV-1414337_54	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1414337_54	COG	COG3756	NA	NA
UHGV-1414337_54	Structural annotation	PF03428, MF_01909, NF008122, COG2345	NA	NA
UHGV-1414337_56	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1414337_56	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1414337_56	UniRef90	UniRef90_UPI001C58A644	AAA family ATPase	NA
UHGV-1414337_56	eggNOG-mapper	1414742.V5R9D2_9CAUD	DNA helicase activity	NA
UHGV-1414337_56	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1414337_56	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1414337_57	Structural annotation	PF12728, NF033787, COG3311	NA	NA