UHGV-1414619

Genome information

Genome length 43,510 bps

CDS count 76

Completeness 99.90% (high-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-1414619
vOTU ID	vOTU-066435
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0286546
BioSample	SAMEA2581914
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.26
Jumbo phage	No

Genome content
Genome length	43,510 bps
GC content	45.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	92.45%
Average CDS length	534.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1414619_1	PHROG	phrog_27197	NA	unknown function
UHGV-1414619_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-1414619_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1414619_1	Structural annotation	NF007410	NA	NA
UHGV-1414619_4	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1414619_4	UniRef90	UniRef90_H2BD49	Putative RecT protein	NA
UHGV-1414619_4	eggNOG-mapper	1129145.H2BD49_9CAUD	DNA metabolic process	NA
UHGV-1414619_4	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1414619_5	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-1414619_5	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1414619_5	UniRef90	UniRef90_G5H8Z1	YqaJ domain-containing protein	NA
UHGV-1414619_5	eggNOG-mapper	742725.HMPREF9450_02077	YqaJ-like viral recombinase domain	NA
UHGV-1414619_5	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1414619_5	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1414619_6	eggNOG-mapper	742725.HMPREF9450_02078	NA	NA
UHGV-1414619_7	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1414619_7	UniRef90	UniRef90_A0A412WPV2	Recombinase	NA
UHGV-1414619_7	eggNOG-mapper	742725.HMPREF9450_02079	NA	NA
UHGV-1414619_7	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-1414619_7	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1414619_7	Structural annotation	PF05766	NA	NA
UHGV-1414619_9	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1414619_9	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1414619_9	UniRef90	UniRef90_A0A7X8CKZ1	ATP-binding protein	NA
UHGV-1414619_9	eggNOG-mapper	742725.HMPREF9450_02081	DNA-dependent DNA replication	NA
UHGV-1414619_9	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1414619_9	Structural annotation	PF00308, MF_03025, NF005992, COG1484	NA	NA
UHGV-1414619_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1414619_13	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1414619_13	UniRef90	UniRef90_A0A6I2NIA6	Methyltransferase	NA
UHGV-1414619_13	eggNOG-mapper	1166018.FAES_1810	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1414619_13	PADLOC	MTase_II_00173	Type II methyltransferase	RM
UHGV-1414619_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1414619_13	COG	COG0863	DNA modification methylase	NA
UHGV-1414619_13	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1414619_15	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-1414619_16	Structural annotation	PF04448	NA	NA
UHGV-1414619_18	PHROG	phrog_874	NA	unknown function
UHGV-1414619_18	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-1414619_18	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1414619_19	PHROG	phrog_1273	NA	unknown function
UHGV-1414619_20	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1414619_20	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-1414619_20	eggNOG-mapper	1121286.AUMT01000013_gene2680	NA	NA
UHGV-1414619_20	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1414619_24	UniRef90	UniRef90_UPI00191FB118	retroviral-like aspartic protease family protein	NA
UHGV-1414619_24	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-1414619_24	COG	COG3577	Predicted aspartyl protease	NA
UHGV-1414619_25	eggNOG-mapper	1121100.JCM6294_1073	NA	NA
UHGV-1414619_25	Pfam	PF08299	Bacterial dnaA protein helix-turn-helix	Bac_DnaA_C
UHGV-1414619_25	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-1414619_25	Structural annotation	PF08299, NF004688	NA	NA
UHGV-1414619_26	UniRef90	UniRef90_A0A1F3LUH0	Fib_succ_major domain-containing protein	NA
UHGV-1414619_26	Structural annotation	PF09603, TIGR02145	NA	NA
UHGV-1414619_27	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1414619_27	UniRef90	UniRef90_G5H914	HTH cro/C1-type domain-containing protein	NA
UHGV-1414619_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1414619_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1414619_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1414619_28	UniRef90	UniRef90_A0A316NYX6	Terminase small subunit	NA
UHGV-1414619_28	eggNOG-mapper	742725.HMPREF9450_02101	COG NOG24226 non supervised orthologous group	NA
UHGV-1414619_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1414619_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1414619_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1414619_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1414619_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1414619_29	UniRef90	UniRef90_G5H916	PBSX family phage terminase, large subunit	NA
UHGV-1414619_29	eggNOG-mapper	742725.HMPREF9450_02102	Phage terminase, large subunit, PBSX family	NA
UHGV-1414619_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1414619_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1414619_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-1414619_29	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1414619_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-1414619_30	eggNOG-mapper	742725.HMPREF9450_02103	Portal protein	NA
UHGV-1414619_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1414619_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1414619_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1414619_31	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1414619_31	UniRef90	UniRef90_A0A2T7BBP6	Phage_Mu_F domain-containing protein	NA
UHGV-1414619_31	COG	COG2369	NA	NA
UHGV-1414619_31	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-1414619_33	PHROG	phrog_16490	NA	unknown function
UHGV-1414619_33	UniRef90	UniRef90_A0A8F1B6F8	Outer capsid protein/viral fiber	NA
UHGV-1414619_33	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-1414619_34	PHROG	phrog_31654	NA	unknown function
UHGV-1414619_34	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-1414619_35	PHROG	phrog_28898	NA	unknown function
UHGV-1414619_35	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-1414619_35	Structural annotation	PF10781	NA	NA
UHGV-1414619_37	PHROG	phrog_38431	NA	unknown function
UHGV-1414619_37	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-1414619_37	eggNOG-mapper	762968.HMPREF9441_00551	NA	NA
UHGV-1414619_40	UniRef90	UniRef90_A0A8D9PFB4	Peptidase M76 family	NA
UHGV-1414619_40	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-1414619_43	KOfam	K06904	NA	NA
UHGV-1414619_43	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1414619_43	UniRef90	UniRef90_G5H929	Caudovirus prohead protease	NA
UHGV-1414619_43	eggNOG-mapper	742725.HMPREF9450_02115	Caudovirus prohead serine protease	NA
UHGV-1414619_43	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1414619_43	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1414619_43	COG	COG3740	Phage head maturation protease	NA
UHGV-1414619_43	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1414619_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-1414619_44	UniRef90	UniRef90_A0A1V5ID18	Phage capsid family protein	NA
UHGV-1414619_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1414619_44	Structural annotation	PF05065, PF15188, MF_04133, TIGR01554, COG4653	NA	NA
UHGV-1414619_45	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1414619_45	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1414619_45	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1414619_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1414619_47	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-1414619_49	PHROG	phrog_1407	major tail protein	tail
UHGV-1414619_49	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-1414619_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1414619_52	PHROG	phrog_32115	NA	unknown function
UHGV-1414619_52	eggNOG-mapper	742725.HMPREF9450_02123	nuclear chromosome segregation	NA
UHGV-1414619_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1414619_53	eggNOG-mapper	742725.HMPREF9450_02124	NA	NA
UHGV-1414619_53	Structural annotation	PF05954, PF09212, TIGR03361, COG4379	NA	NA
UHGV-1414619_54	Structural annotation	PF03370	NA	NA
UHGV-1414619_60	PHROG	phrog_873	endolysin	head and packaging
UHGV-1414619_60	UniRef90	UniRef90_UPI0018982FB2	structural protein P5	NA
UHGV-1414619_60	eggNOG-mapper	742725.HMPREF9450_02130	NA	NA
UHGV-1414619_61	PHROG	phrog_26448	NA	unknown function
UHGV-1414619_61	eggNOG-mapper	742725.HMPREF9450_00898	NA	NA
UHGV-1414619_61	Pfam	PF20647	NA	DUF6808
UHGV-1414619_61	Structural annotation	PF20647	NA	NA
UHGV-1414619_62	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1414619_62	PHROG	phrog_1	integrase	integration and excision
UHGV-1414619_62	UniRef90	UniRef90_G5H8X3	Tyr recombinase domain-containing protein	NA
UHGV-1414619_62	eggNOG-mapper	742725.HMPREF9450_02059	Belongs to the 'phage' integrase family	NA
UHGV-1414619_62	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-1414619_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1414619_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1414619_62	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1414619_63	UniRef90	UniRef90_UPI001AAF47BF	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-1414619_63	eggNOG-mapper	742725.HMPREF9450_02060	NA	NA
UHGV-1414619_63	Structural annotation	PF21748, COG1598	NA	NA
UHGV-1414619_64	UniRef90	UniRef90_A0A396MBG1	NA	NA
UHGV-1414619_64	eggNOG-mapper	742725.HMPREF9450_02061	NA	NA
UHGV-1414619_64	Pfam	PF16476	NA	DUF5053
UHGV-1414619_64	Structural annotation	PF16476	NA	NA
UHGV-1414619_66	UniRef90	UniRef90_G5H8X6	OMP_b-brl_2 domain-containing protein	NA
UHGV-1414619_66	eggNOG-mapper	742725.HMPREF9450_02062	Outer membrane protein beta-barrel domain	NA
UHGV-1414619_66	Pfam	PF13568	Outer membrane protein beta-barrel domain	OMP_b-brl_2
UHGV-1414619_66	COG	COG3637	Opacity protein LomR and related surface antigens	NA
UHGV-1414619_67	PHROG	phrog_19292	NA	unknown function
UHGV-1414619_67	Structural annotation	PF11524, MF_00338, TIGR03884, COG0393	NA	NA
UHGV-1414619_68	UniRef90	UniRef90_UPI001C031F7E	XRE family transcriptional regulator	NA
UHGV-1414619_68	eggNOG-mapper	1127692.HMPREF9075_00502	NA	NA
UHGV-1414619_68	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1414619_68	Structural annotation	PF12844, NF007257	NA	NA
UHGV-1414619_70	Structural annotation	PF01475, MF_01909, NF041413, COG5045	NA	NA
UHGV-1414619_72	UniRef90	UniRef90_G5H8Y2	HTH luxR-type domain-containing protein	NA
UHGV-1414619_72	Structural annotation	PF00196, MF_00674, COG2771	NA	NA
UHGV-1414619_76	PHROG	phrog_4433	NA	unknown function
UHGV-1414619_76	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-1414619_76	COG	COG5164	Transcription elongation factor SPT5	NA