UHGV-1414869

Genome information

Genome length 43,498 bps

CDS count 67

Completeness 99.90% (high-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-1414869
vOTU ID	vOTU-012933
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0286502
BioSample	SAMN02334143
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.8
Jumbo phage	No

Genome content
Genome length	43,498 bps
GC content	57.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	95.06%
Average CDS length	622.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1414869_1	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1414869_1	UniRef90	UniRef90_UPI0015701100	DNA cytosine methyltransferase	NA
UHGV-1414869_1	eggNOG-mapper	903814.ELI_3130	C-5 cytosine-specific DNA methylase	NA
UHGV-1414869_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1414869_2	PHROG	phrog_4433	NA	unknown function
UHGV-1414869_2	eggNOG-mapper	33035.JPJF01000122_gene2458	regulation of DNA-templated transcription, elongation	NA
UHGV-1414869_2	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1414869_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1414869_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1414869_3	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1414869_3	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-1414869_6	PHROG	phrog_7566	NA	unknown function
UHGV-1414869_6	UniRef90	UniRef90_A0A3D5LSW4	Phosphoenolpyruvate carboxykinase	NA
UHGV-1414869_6	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-1414869_12	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1414869_12	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1414869_12	UniRef90	UniRef90_A0A8E3SLX4	Helix-turn-helix transcriptional regulator	NA
UHGV-1414869_12	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-1414869_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1414869_12	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1414869_12	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1414869_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1414869_16	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1414869_16	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-1414869_17	KOfam	K14059	int; integrase	NA
UHGV-1414869_17	PHROG	phrog_1	integrase	integration and excision
UHGV-1414869_17	UniRef90	UniRef90_A0A174DBH0	Site-specific tyrosine recombinase XerC	NA
UHGV-1414869_17	eggNOG-mapper	1514668.JOOA01000001_gene242	Phage integrase family	NA
UHGV-1414869_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1414869_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1414869_17	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1414869_18	Structural annotation	PF12510	NA	NA
UHGV-1414869_19	PHROG	phrog_20016	NA	unknown function
UHGV-1414869_19	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1414869_19	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1414869_19	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1414869_20	PHROG	phrog_16490	NA	unknown function
UHGV-1414869_20	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1414869_21	PHROG	phrog_22984	NA	unknown function
UHGV-1414869_22	PHROG	phrog_21718	NA	unknown function
UHGV-1414869_22	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-1414869_22	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-1414869_23	PHROG	phrog_3754	NA	unknown function
UHGV-1414869_23	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1414869_24	UniRef90	UniRef90_U2SNH2	LPD23 domain-containing protein	NA
UHGV-1414869_24	eggNOG-mapper	1226322.HMPREF1545_00787	NA	NA
UHGV-1414869_24	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-1414869_25	eggNOG-mapper	1203606.HMPREF1526_02741	NA	NA
UHGV-1414869_26	PHROG	phrog_156	portal protein	head and packaging
UHGV-1414869_26	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-1414869_26	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1414869_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1414869_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1414869_27	UniRef90	UniRef90_A0A1Y3SC75	Terminase_3 domain-containing protein	NA
UHGV-1414869_27	eggNOG-mapper	1519439.JPJG01000060_gene1885	phage Terminase large subunit	NA
UHGV-1414869_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1414869_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1414869_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-1414869_27	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1414869_28	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1414869_28	eggNOG-mapper	1519439.JPJG01000060_gene1903	NA	NA
UHGV-1414869_28	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1414869_30	PHROG	phrog_371	major head protein	head and packaging
UHGV-1414869_30	UniRef90	UniRef90_A0A8F2JBL2	Mu-like prophage major head subunit gpT family protein	NA
UHGV-1414869_30	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-1414869_30	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1414869_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1414869_31	PHROG	phrog_24113	NA	unknown function
UHGV-1414869_31	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1414869_31	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1414869_32	PHROG	phrog_35275	NA	unknown function
UHGV-1414869_32	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-1414869_34	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-1414869_35	PHROG	phrog_21357	endolysin	lysis
UHGV-1414869_35	UniRef90	UniRef90_A0A509ER44	Endolysin	NA
UHGV-1414869_35	eggNOG-mapper	97139.C824_00684	lysozyme activity	NA
UHGV-1414869_35	Pfam	PF05257	CHAP domain	CHAP
UHGV-1414869_35	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1414869_35	COG	COG1388	LysM repeat	NA
UHGV-1414869_35	Structural annotation	PF01471, PF10030, TIGR02594, NF038080, COG3409, COG3942	NA	NA
UHGV-1414869_36	PHROG	phrog_881	holin	lysis
UHGV-1414869_36	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-1414869_36	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-1414869_36	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1414869_36	Structural annotation	PF16938	NA	NA
UHGV-1414869_37	PHROG	phrog_937	hemolysin	other
UHGV-1414869_39	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-1414869_39	PHROG	phrog_12105	NA	unknown function
UHGV-1414869_39	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1414869_39	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1414869_40	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1414869_40	eggNOG-mapper	1226322.HMPREF1545_03842	DNA-packaging protein gp3	NA
UHGV-1414869_40	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1414869_40	Structural annotation	PF16677	NA	NA
UHGV-1414869_41	UniRef90	UniRef90_UPI0013C3FC23	chromate transporter	NA
UHGV-1414869_41	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-1414869_42	PHROG	phrog_25567	NA	unknown function
UHGV-1414869_42	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-1414869_42	Structural annotation	NF040522, COG2944	NA	NA
UHGV-1414869_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1414869_44	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-1414869_44	Structural annotation	PF01446, NF041486	NA	NA
UHGV-1414869_51	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1414869_51	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1414869_51	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1414869_52	PHROG	phrog_22389	NA	unknown function
UHGV-1414869_52	Structural annotation	PF01402, COG4710	NA	NA
UHGV-1414869_53	eggNOG-mapper	1284775.HMPREF1640_07180	NA	NA
UHGV-1414869_54	eggNOG-mapper	360911.EAT1b_0016	NA	NA
UHGV-1414869_57	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1414869_57	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1414869_57	UniRef90	UniRef90_UPI000F8F51C1	Lar family restriction alleviation protein	NA
UHGV-1414869_57	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1414869_57	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1414869_57	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1414869_57	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1414869_58	UniRef90	UniRef90_UPI000DA5F351	Lar family restriction alleviation protein	NA
UHGV-1414869_58	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1414869_58	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1414869_59	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-1414869_59	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1414869_59	UniRef90	UniRef90_A0A3R6R5U2	Restriction alleviation protein, Lar family	NA
UHGV-1414869_59	eggNOG-mapper	56780.SYN_03368	translation initiation factor activity	NA
UHGV-1414869_59	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1414869_59	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1414869_59	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-1414869_59	COG	COG1601	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	NA
UHGV-1414869_59	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1414869_60	PHROG	phrog_38832	NA	unknown function
UHGV-1414869_60	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-1414869_62	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1414869_62	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-1414869_62	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-1414869_62	Pfam	PF14359	NA	DUF4406
UHGV-1414869_62	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-1414869_64	Pfam	PF04448	NA	DUF551
UHGV-1414869_64	Structural annotation	NF041588	NA	NA
UHGV-1414869_65	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1414869_65	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1414869_65	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-1414869_65	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1414869_65	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1414869_65	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1414869_65	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1414869_65	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1414869_65	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1414869_66	UniRef90	UniRef90_UPI001C01A488	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1414869_66	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-1414869_66	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1414869_66	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1414869_67	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1414869_67	NCBIFam	TIGR01446.1	DnaD domain protein	NA