UHGV-1415194

Genome information

vOTU vOTU-020993

Genome length 35,022 bps

CDS count 45

Completeness 88.17% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-1415194
vOTU ID	vOTU-020993
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0238638
BioSample	SAMEA2738148
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.56
Jumbo phage	No

Genome content
Genome length	35,022 bps
GC content	41.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.56%
Average CDS length	739.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1415194_1	KOfam	K14059	int; integrase	NA
UHGV-1415194_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1415194_1	UniRef90	UniRef90_A0A1S1H1Q4	Integrase	NA
UHGV-1415194_1	eggNOG-mapper	157924.Q7Y4M3_9CAUD	Phage integrase family	NA
UHGV-1415194_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1415194_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1415194_2	PHROG	phrog_4431	NA	unknown function
UHGV-1415194_2	UniRef90	UniRef90_A0A4U9XLP4	NA	NA
UHGV-1415194_2	eggNOG-mapper	1449343.JQLQ01000002_gene1561	NA	NA
UHGV-1415194_3	PHROG	phrog_87	metallo-protease	other
UHGV-1415194_3	UniRef90	UniRef90_UPI001BDAF951	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1415194_3	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-1415194_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1415194_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1415194_3	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-1415194_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1415194_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1415194_4	UniRef90	UniRef90_UPI00115C39AC	helix-turn-helix domain-containing protein	NA
UHGV-1415194_4	eggNOG-mapper	1035189.HMPREF9954_1969	sequence-specific DNA binding	NA
UHGV-1415194_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1415194_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1415194_4	Structural annotation	PF01381, MF_00535, TIGR02607, COG3655	NA	NA
UHGV-1415194_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1415194_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1415194_5	UniRef90	UniRef90_F9PY91	DNA-binding helix-turn-helix protein	NA
UHGV-1415194_5	eggNOG-mapper	1035189.HMPREF9954_1968	sequence-specific DNA binding	NA
UHGV-1415194_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1415194_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1415194_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1415194_6	PHROG	phrog_2273	NA	unknown function
UHGV-1415194_6	UniRef90	UniRef90_Q7Y4K8	Gp16	NA
UHGV-1415194_7	PHROG	phrog_2648	NA	unknown function
UHGV-1415194_7	UniRef90	UniRef90_A0A081R6P3	NA	NA
UHGV-1415194_8	PHROG	phrog_4074	NA	unknown function
UHGV-1415194_8	eggNOG-mapper	1232430.CAVG010000115_gene1032	NA	NA
UHGV-1415194_9	PHROG	phrog_33499	NA	unknown function
UHGV-1415194_9	UniRef90	UniRef90_A0A139RFE1	NA	NA
UHGV-1415194_9	eggNOG-mapper	1035189.HMPREF9954_1962	NA	NA
UHGV-1415194_10	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1415194_10	PHROG	phrog_1499	NA	unknown function
UHGV-1415194_10	UniRef90	UniRef90_I2NHU9	AAA_15 domain-containing protein	NA
UHGV-1415194_10	eggNOG-mapper	1000588.HMPREF9965_1724	AAA domain	NA
UHGV-1415194_10	Pfam	PF13476	AAA domain	AAA_23
UHGV-1415194_10	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1415194_10	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-1415194_11	PHROG	phrog_2486	NA	unknown function
UHGV-1415194_11	UniRef90	UniRef90_A0A4V0EBD6	NA	NA
UHGV-1415194_12	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1415194_12	UniRef90	UniRef90_A0A5J6LNF8	ATP-binding protein	NA
UHGV-1415194_12	eggNOG-mapper	936580.HMPREF1516_0740	AAA domain	NA
UHGV-1415194_12	Pfam	PF13479	AAA domain	AAA_24
UHGV-1415194_12	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1415194_13	PHROG	phrog_2698	NA	unknown function
UHGV-1415194_13	UniRef90	UniRef90_A0A4V0ECJ9	NA	NA
UHGV-1415194_13	eggNOG-mapper	1403946.Q615_SPAC00127G0153	NA	NA
UHGV-1415194_13	Structural annotation	PF05037	NA	NA
UHGV-1415194_14	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1415194_14	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1415194_14	UniRef90	UniRef90_A0A359YH37	DNA helicase, phage-associated / Type III restriction enzme	NA
UHGV-1415194_14	eggNOG-mapper	936580.HMPREF1516_0736	helicase	NA
UHGV-1415194_14	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1415194_14	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1415194_14	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1415194_14	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1415194_14	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1415194_15	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1415194_15	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1415194_15	UniRef90	UniRef90_UPI00066A25F3	DNA cytosine methyltransferase	NA
UHGV-1415194_15	eggNOG-mapper	482234.SCAZ3_10455	C-5 cytosine-specific DNA methylase	NA
UHGV-1415194_15	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1415194_15	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1415194_15	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1415194_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1415194_15	Structural annotation	PF00145, MF_01857, TIGR00675, COG0270	NA	NA
UHGV-1415194_16	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1415194_16	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1415194_16	UniRef90	UniRef90_UPI0006602B36	AAA family ATPase	NA
UHGV-1415194_16	eggNOG-mapper	1123304.AQYA01000037_gene199	Primase C terminal 2 (PriCT-2)	NA
UHGV-1415194_16	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1415194_16	Pfam	PF13481	AAA domain	AAA_25
UHGV-1415194_16	COG	COG3598	RecA-family ATPase	NA
UHGV-1415194_16	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1415194_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1415194_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1415194_18	UniRef90	UniRef90_I2NHS8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1415194_18	eggNOG-mapper	1000588.HMPREF9965_1714	Endodeoxyribonuclease RusA	NA
UHGV-1415194_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1415194_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1415194_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1415194_19	PHROG	phrog_3745	NA	unknown function
UHGV-1415194_19	UniRef90	UniRef90_A0A0Z8F668	Phage associated protein	NA
UHGV-1415194_19	eggNOG-mapper	1423734.JCM14202_3068	NA	NA
UHGV-1415194_21	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1415194_21	UniRef90	UniRef90_UPI001CC0DD55	helix-turn-helix domain-containing protein	NA
UHGV-1415194_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1415194_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1415194_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1415194_22	PHROG	phrog_1691	NA	unknown function
UHGV-1415194_22	eggNOG-mapper	278197.PEPE_0774	NA	NA
UHGV-1415194_23	PHROG	phrog_121	NA	unknown function
UHGV-1415194_23	UniRef90	UniRef90_UPI000660586D	NA	NA
UHGV-1415194_23	eggNOG-mapper	365659.smi_0429	NA	NA
UHGV-1415194_23	Pfam	PF07852	NA	DUF1642
UHGV-1415194_23	Structural annotation	PF07852	NA	NA
UHGV-1415194_24	PHROG	phrog_3606	NA	unknown function
UHGV-1415194_25	PHROG	phrog_884	NA	unknown function
UHGV-1415194_25	UniRef90	UniRef90_UPI00094EDA92	NA	NA
UHGV-1415194_25	eggNOG-mapper	585203.SMSK564_1298	NA	NA
UHGV-1415194_25	Pfam	PF07116	NA	DUF1372
UHGV-1415194_25	Structural annotation	PF07116, COG3585	NA	NA
UHGV-1415194_26	PHROG	phrog_29132	NA	unknown function
UHGV-1415194_27	UniRef90	UniRef90_K8MR92	RinA family phage transcriptional regulator	NA
UHGV-1415194_27	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-1415194_27	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-1415194_28	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-1415194_28	UniRef90	UniRef90_A0A3A4MLN5	Chromosome partitioning protein ParB	NA
UHGV-1415194_28	eggNOG-mapper	1123302.KB904167_gene511	NA	NA
UHGV-1415194_28	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1415194_28	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1415194_28	Pfam	PF14386	NA	DUF4417
UHGV-1415194_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1415194_28	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-1415194_29	PHROG	phrog_5057	NA	unknown function
UHGV-1415194_30	PHROG	phrog_2412	NA	unknown function
UHGV-1415194_30	UniRef90	UniRef90_A0A6Z7A1E4	Stress-induced protein	NA
UHGV-1415194_30	eggNOG-mapper	12402.Q708N5_9CAUD	NA	NA
UHGV-1415194_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1415194_31	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-1415194_31	UniRef90	UniRef90_A0A4D6A7U4	Terminase large subunit	NA
UHGV-1415194_31	eggNOG-mapper	1123304.AQYA01000037_gene214	Phage terminase, large subunit	NA
UHGV-1415194_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1415194_31	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1415194_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1415194_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1415194_31	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1415194_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-1415194_32	UniRef90	UniRef90_I2NHN1	Phage portal protein, SPP1 family	NA
UHGV-1415194_32	eggNOG-mapper	1123318.KB904586_gene510	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1415194_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1415194_32	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1415194_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1415194_33	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1415194_33	UniRef90	UniRef90_A0A4D6ABC1	Phage_Mu_F domain-containing protein	NA
UHGV-1415194_33	eggNOG-mapper	1123302.KB904182_gene74	Phage Mu protein F like protein	NA
UHGV-1415194_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1415194_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1415194_33	COG	COG2369	NA	NA
UHGV-1415194_33	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1415194_35	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1415194_35	UniRef90	UniRef90_UPI00065FA9D1	NA	NA
UHGV-1415194_35	eggNOG-mapper	1314.HKU360_01488	NA	NA
UHGV-1415194_35	Pfam	PF14265	NA	DUF4355
UHGV-1415194_35	Structural annotation	PF14265	NA	NA
UHGV-1415194_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-1415194_36	UniRef90	UniRef90_A0A359YJW0	Phage major capsid protein	NA
UHGV-1415194_36	eggNOG-mapper	403905.A7J297_9CAUD	NA	NA
UHGV-1415194_36	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1415194_37	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1415194_37	UniRef90	UniRef90_UPI001CBA81EF	phage head-tail connector protein	NA
UHGV-1415194_37	eggNOG-mapper	1123318.KB904586_gene504	Phage gp6-like head-tail connector protein	NA
UHGV-1415194_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1415194_38	PHROG	phrog_348	minor head protein	head and packaging
UHGV-1415194_38	UniRef90	UniRef90_A0A4V0EDU8	NA	NA
UHGV-1415194_38	eggNOG-mapper	1123318.KB904586_gene503	NA	NA
UHGV-1415194_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1415194_39	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1415194_39	UniRef90	UniRef90_A0A359YH62	NA	NA
UHGV-1415194_39	eggNOG-mapper	1123318.KB904586_gene502	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1415194_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1415194_39	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1415194_39	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1415194_40	PHROG	phrog_176	tail terminator	connector
UHGV-1415194_40	UniRef90	UniRef90_A0A4V6LP76	NA	NA
UHGV-1415194_40	eggNOG-mapper	1123318.KB904586_gene501	NA	NA
UHGV-1415194_40	Structural annotation	PF06141, MF_00281, COG0016	NA	NA
UHGV-1415194_41	PHROG	phrog_238	major tail protein	tail
UHGV-1415194_41	UniRef90	UniRef90_UPI001CBC4288	phage major tail protein, TP901-1 family	NA
UHGV-1415194_41	eggNOG-mapper	1314.HKU360_01482	domain, Protein	NA
UHGV-1415194_41	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-1415194_41	COG	COG5492	NA	NA
UHGV-1415194_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1415194_42	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1415194_42	UniRef90	UniRef90_I2NHV7	NA	NA
UHGV-1415194_42	eggNOG-mapper	1314.HKU360_01481	Phage tail assembly chaperone protein, TAC	NA
UHGV-1415194_42	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1415194_42	Structural annotation	PF12363	NA	NA
UHGV-1415194_43	PHROG	phrog_1204	tail protein	tail
UHGV-1415194_43	UniRef90	UniRef90_UPI001CBB85A6	phage tail tape measure protein	NA
UHGV-1415194_43	eggNOG-mapper	1158614.I592_02260	nuclear chromosome segregation	NA
UHGV-1415194_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1415194_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1415194_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1415194_43	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1415194_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1415194_44	UniRef90	UniRef90_UPI001CBE7925	phage tail protein	NA
UHGV-1415194_44	eggNOG-mapper	1314.HKU360_01478	Phage tail protein	NA
UHGV-1415194_44	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1415194_45	PHROG	phrog_3095	tail protein with endopeptidase activity	other
UHGV-1415194_45	UniRef90	UniRef90_UPI001CBB2C0D	phage tail protein	NA
UHGV-1415194_45	eggNOG-mapper	1123302.KB904182_gene60	Prophage endopeptidase tail	NA
UHGV-1415194_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1415194_45	COG	COG1511	NA	NA