UHGV-1415212

Genome information

Genome length 16,257 bps

CDS count 20

Completeness 72.94% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-1415212
vOTU ID	vOTU-016389
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0108260
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.94% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.29
Jumbo phage	No

Genome content
Genome length	16,257 bps
GC content	40.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	94.73%
Average CDS length	775.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1415212_3	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-1415212_3	PHROG	phrog_2234	tail spike protein	tail
UHGV-1415212_3	eggNOG-mapper	935845.JADQ01000016_gene3646	Pectate lyase superfamily protein	NA
UHGV-1415212_3	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-1415212_3	COG	COG5434	Polygalacturonase	NA
UHGV-1415212_3	Structural annotation	PF12708, TIGR03808, COG5434	NA	NA
UHGV-1415212_4	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1415212_4	UniRef90	UniRef90_A0A7T7ZAL4	Lower collar protein	NA
UHGV-1415212_4	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-1415212_5	PHROG	phrog_2038	upper collar connector	connector
UHGV-1415212_5	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-1415212_5	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-1415212_5	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1415212_5	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-1415212_6	PHROG	phrog_2248	tail protein	tail
UHGV-1415212_6	UniRef90	UniRef90_A0A843HUB8	Caud_tail_N domain-containing protein	NA
UHGV-1415212_6	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-1415212_6	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1415212_6	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1415212_6	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1415212_7	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1415212_7	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-1415212_7	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-1415212_7	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1415212_7	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1415212_9	PHROG	phrog_11037	NA	unknown function
UHGV-1415212_9	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-1415212_9	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-1415212_9	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1415212_9	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1415212_9	COG	COG3942	Surface antigen	NA
UHGV-1415212_9	Structural annotation	PF18013, PF05382, NF008096, COG3738	NA	NA
UHGV-1415212_10	PHROG	phrog_7698	endolysin	lysis
UHGV-1415212_10	UniRef90	UniRef90_A0A3B9GPW1	Cpl-7 domain-containing protein	NA
UHGV-1415212_10	eggNOG-mapper	411490.ANACAC_00721	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-1415212_10	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1415212_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1415212_10	Structural annotation	PF08230	NA	NA
UHGV-1415212_12	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1415212_12	Structural annotation	PF17548	NA	NA
UHGV-1415212_13	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1415212_13	UniRef90	UniRef90_A0A345BNN7	Single-stranded DNA-binding protein	NA
UHGV-1415212_13	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-1415212_13	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-1415212_13	Structural annotation	PF17427	NA	NA
UHGV-1415212_14	PHROG	phrog_10365	late transcriptional activator	transcription regulation
UHGV-1415212_14	Pfam	PF05464	Phi-29-like late genes activator (early protein GP4)	Phi-29_GP4
UHGV-1415212_14	Structural annotation	PF05464	NA	NA
UHGV-1415212_15	Structural annotation	PF05435	NA	NA
UHGV-1415212_16	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1415212_16	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1415212_16	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-1415212_16	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-1415212_16	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1415212_16	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1415212_17	PHROG	phrog_2150	terminase	head and packaging
UHGV-1415212_17	UniRef90	UniRef90_A0A843HWD4	Phage DNA encapsidation protein	NA
UHGV-1415212_17	eggNOG-mapper	503388.B1ABI1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1415212_17	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1415212_17	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA