UHGV-1415225

Genome information

vOTU vOTU-020896

Genome length 14,401 bps

CDS count 16

Completeness 74.89% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-1415225
vOTU ID	vOTU-020896
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0084815
BioSample	SAMEA2042111
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.21
Jumbo phage	No

Genome content
Genome length	14,401 bps
GC content	40.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	16
CDS density	92.57%
Average CDS length	835.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1415225_2	Structural annotation	PF17548	NA	NA
UHGV-1415225_3	Structural annotation	PF17427	NA	NA
UHGV-1415225_4	UniRef90	UniRef90_A0A345MZF5	DNA polymerase	NA
UHGV-1415225_5	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-1415225_5	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1415225_5	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-1415225_5	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-1415225_5	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-1415225_5	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-1415225_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-1415225_6	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-1415225_6	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-1415225_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-1415225_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1415225_9	KOfam	K07273	acm; lysozyme	NA
UHGV-1415225_9	PHROG	phrog_291	endolysin	lysis
UHGV-1415225_9	UniRef90	UniRef90_UPI000D0FBDB9	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1415225_9	eggNOG-mapper	1304880.JAGB01000002_gene2202	Glycosyl hydrolase, family 25	NA
UHGV-1415225_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1415225_9	COG	COG1388	LysM repeat	NA
UHGV-1415225_9	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1415225_10	PHROG	phrog_11037	NA	unknown function
UHGV-1415225_10	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-1415225_10	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-1415225_10	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1415225_10	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1415225_10	COG	COG3942	Surface antigen	NA
UHGV-1415225_10	Structural annotation	PF18013	NA	NA
UHGV-1415225_12	PHROG	phrog_2006	major head protein	head and packaging
UHGV-1415225_12	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-1415225_12	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-1415225_12	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-1415225_13	PHROG	phrog_2248	tail protein	tail
UHGV-1415225_13	UniRef90	UniRef90_A0A843HN65	Caud_tail_N domain-containing protein	NA
UHGV-1415225_13	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-1415225_13	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-1415225_13	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-1415225_13	Structural annotation	PF20934, PF16838	NA	NA
UHGV-1415225_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-1415225_14	UniRef90	UniRef90_M4W5Z5	Upper collar connector	NA
UHGV-1415225_14	eggNOG-mapper	1309583.M4W5Z5_9CAUD	Phage Connector (GP10)	NA
UHGV-1415225_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-1415225_14	Structural annotation	PF05352, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1415225_15	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-1415225_15	UniRef90	UniRef90_Q37892	Proximal tail tube connector protein	NA
UHGV-1415225_15	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-1415225_16	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-1415225_16	PHROG	phrog_7043	tail protein	tail
UHGV-1415225_16	eggNOG-mapper	536227.CcarbDRAFT_0332	Beta-lactamase superfamily domain	NA
UHGV-1415225_16	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-1415225_16	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1415225_16	Structural annotation	PF12708, TIGR03805, COG5434	NA	NA