UHGV-1415984

Genome information

Genome length 57,906 bps

CDS count 81

Completeness 99.90% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-1415984
vOTU ID	vOTU-069398
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0327790
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.83
Jumbo phage	No

Genome content
Genome length	57,906 bps
GC content	36.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	94.69%
Average CDS length	681.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1415984_2	Structural annotation	PF17376	NA	NA
UHGV-1415984_7	PHROG	phrog_998	endolysin	lysis
UHGV-1415984_7	UniRef90	UniRef90_A0A4D6AB26	Lysin	NA
UHGV-1415984_7	eggNOG-mapper	873448.STRPO_0302	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1415984_7	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1415984_7	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1415984_7	Structural annotation	PF05382, PF18341, NF033742, COG0791, COG4991	NA	NA
UHGV-1415984_9	PHROG	phrog_1554	NA	unknown function
UHGV-1415984_9	UniRef90	UniRef90_A0A139Q9H9	NA	NA
UHGV-1415984_9	eggNOG-mapper	1035189.HMPREF9954_1920	NA	NA
UHGV-1415984_9	Structural annotation	PF07104	NA	NA
UHGV-1415984_11	PHROG	phrog_1330	tail protein	tail
UHGV-1415984_11	eggNOG-mapper	1158604.I591_01756	Prophage endopeptidase tail	NA
UHGV-1415984_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1415984_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1415984_11	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1415984_11	Structural annotation	PF14594, PF00629, PF10528, TIGR01665, NF033675, NF038393, COG4926	NA	NA
UHGV-1415984_12	UniRef90	UniRef90_A0A1M5Z1G4	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-1415984_12	eggNOG-mapper	1408422.JHYF01000021_gene970	tail component	NA
UHGV-1415984_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-1415984_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1415984_13	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-1415984_13	UniRef90	UniRef90_A0A374ABI2	TMP_3 domain-containing protein	NA
UHGV-1415984_13	eggNOG-mapper	742733.HMPREF9469_05020	phage tail tape measure protein	NA
UHGV-1415984_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1415984_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1415984_13	COG	COG5412	Phage-related protein	NA
UHGV-1415984_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1415984_15	UniRef90	UniRef90_UPI000659DD5E	HK97 gp10 family phage protein	NA
UHGV-1415984_15	eggNOG-mapper	665950.HMPREF1025_02006	NA	NA
UHGV-1415984_15	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-1415984_16	PHROG	phrog_4338	NA	unknown function
UHGV-1415984_16	eggNOG-mapper	475178.B2BTI0_9CAUD	NA	NA
UHGV-1415984_17	PHROG	phrog_4282	NA	unknown function
UHGV-1415984_17	eggNOG-mapper	742733.HMPREF9469_05024	NA	NA
UHGV-1415984_18	PHROG	phrog_2645	major tail protein	tail
UHGV-1415984_18	UniRef90	UniRef90_A0A2U8UHX0	Major tail protein	NA
UHGV-1415984_18	eggNOG-mapper	742733.HMPREF9469_05026	NA	NA
UHGV-1415984_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1415984_19	eggNOG-mapper	478749.BRYFOR_08519	NA	NA
UHGV-1415984_19	Structural annotation	PF20765	NA	NA
UHGV-1415984_20	PHROG	phrog_4270	NA	unknown function
UHGV-1415984_20	eggNOG-mapper	742740.HMPREF9474_02268	NA	NA
UHGV-1415984_20	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1415984_21	KOfam	K06904	NA	NA
UHGV-1415984_21	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-1415984_21	UniRef90	UniRef90_A0A6G5Y7H0	BIG2 domain-containing protein	NA
UHGV-1415984_21	eggNOG-mapper	1476888.X4YUP1_9CAUD	peptidase activity	NA
UHGV-1415984_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1415984_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1415984_21	Structural annotation	PF05065, PF04586, MF_04119, TIGR01554, TIGR01543, COG4653, COG3740	NA	NA
UHGV-1415984_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-1415984_22	UniRef90	UniRef90_A0A7V7AAV0	Phage portal protein	NA
UHGV-1415984_22	eggNOG-mapper	411460.RUMTOR_01348	Phage portal protein	NA
UHGV-1415984_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1415984_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1415984_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1415984_23	UniRef90	UniRef90_A0A5C7M263	Terminase	NA
UHGV-1415984_23	eggNOG-mapper	691965.D4P7C5_9CAUD	Phage Terminase	NA
UHGV-1415984_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1415984_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1415984_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1415984_24	PHROG	phrog_7021	NA	unknown function
UHGV-1415984_25	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-1415984_26	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1415984_26	UniRef90	UniRef90_X4YEE5	Homing endonuclease	NA
UHGV-1415984_26	eggNOG-mapper	475178.B2BTG9_9CAUD	NA	NA
UHGV-1415984_27	PHROG	phrog_4259	NA	unknown function
UHGV-1415984_28	PHROG	phrog_6918	holin	lysis
UHGV-1415984_28	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1415984_28	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1415984_30	PHROG	phrog_4303	NA	unknown function
UHGV-1415984_30	eggNOG-mapper	475178.B2BTP0_9CAUD	NA	NA
UHGV-1415984_31	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1415984_31	UniRef90	UniRef90_A0A1C5MZZ8	Transposase and inactivated derivatives, IS30 family	NA
UHGV-1415984_31	eggNOG-mapper	742740.HMPREF9474_02278	NA	NA
UHGV-1415984_31	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-1415984_31	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1415984_31	Structural annotation	PF05183	NA	NA
UHGV-1415984_32	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1415984_32	UniRef90	UniRef90_A0A6N9P4D1	NA	NA
UHGV-1415984_32	eggNOG-mapper	478749.BRYFOR_08535	NA	NA
UHGV-1415984_32	Pfam	PF10926	NA	DUF2800
UHGV-1415984_32	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1415984_33	UniRef90	UniRef90_A0A140G723	Holliday junction resolvase	NA
UHGV-1415984_33	eggNOG-mapper	691965.D4P7L5_9CAUD	NA	NA
UHGV-1415984_33	Structural annotation	PF01870, COG1591	NA	NA
UHGV-1415984_34	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1415984_34	UniRef90	UniRef90_A0A4D7AM36	DEAD/DEAH box helicase family protein	NA
UHGV-1415984_34	eggNOG-mapper	665950.HMPREF1025_01961	Helicase conserved C-terminal domain	NA
UHGV-1415984_34	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1415984_34	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-1415984_35	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1415984_35	eggNOG-mapper	742733.HMPREF9469_05065	NA	NA
UHGV-1415984_35	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-1415984_36	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-1415984_36	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1415984_36	UniRef90	UniRef90_A0A6G5Y767	SF3 helicase domain-containing protein	NA
UHGV-1415984_36	eggNOG-mapper	475178.B2BTL9_9CAUD	nucleic acid binding	NA
UHGV-1415984_37	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1415984_37	UniRef90	UniRef90_A0A4Q5C8Z8	SF3 helicase domain-containing protein	NA
UHGV-1415984_37	eggNOG-mapper	475178.B2BTL9_9CAUD	nucleic acid binding	NA
UHGV-1415984_37	Pfam	PF19263	NA	DUF5906
UHGV-1415984_37	Structural annotation	PF00519, PF09250, MF_00016, NF011296, COG3378, COG4983	NA	NA
UHGV-1415984_39	PHROG	phrog_998	endolysin	lysis
UHGV-1415984_39	UniRef90	UniRef90_A0A139R807	Phage lysin, N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1415984_39	eggNOG-mapper	59241.E7DNC3_BPDP1	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1415984_39	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1415984_39	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1415984_39	Structural annotation	PF19127, PF05382, TIGR04035, NF008096, COG5263, COG3942	NA	NA
UHGV-1415984_41	PHROG	phrog_1485	NA	unknown function
UHGV-1415984_41	eggNOG-mapper	873447.SPB_0706	NA	NA
UHGV-1415984_41	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-1415984_50	PHROG	phrog_2152	NA	unknown function
UHGV-1415984_50	eggNOG-mapper	1476888.X4YUS5_9CAUD	NA	NA
UHGV-1415984_50	Pfam	PF19880	NA	DUF6353
UHGV-1415984_50	Structural annotation	PF19880, NF010306	NA	NA
UHGV-1415984_55	PHROG	phrog_4079	NA	unknown function
UHGV-1415984_55	eggNOG-mapper	665950.HMPREF1025_01947	NA	NA
UHGV-1415984_80	PHROG	phrog_1494	NA	unknown function