UHGV-1416517

Genome information

Genome length 34,955 bps

CDS count 58

Completeness 96.75% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-1416517
vOTU ID	vOTU-010002
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0238267
BioSample	SAMEA2338823
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.98
Jumbo phage	No

Genome content
Genome length	34,955 bps
GC content	34.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	92.21%
Average CDS length	558.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1416517_1	KOfam	K14059	int; integrase	NA
UHGV-1416517_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1416517_1	UniRef90	UniRef90_A0A6G7ZDV9	Tyrosine-type recombinase/integrase	NA
UHGV-1416517_1	eggNOG-mapper	575608.B7T092_9CAUD	Phage integrase family	NA
UHGV-1416517_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1416517_2	eggNOG-mapper	1232446.BAIE02000003_gene848	NA	NA
UHGV-1416517_2	Structural annotation	PF09274	NA	NA
UHGV-1416517_3	KOfam	K07273	acm; lysozyme	NA
UHGV-1416517_3	PHROG	phrog_291	endolysin	lysis
UHGV-1416517_3	UniRef90	UniRef90_UPI001C395B9C	SH3 domain-containing protein	NA
UHGV-1416517_3	eggNOG-mapper	1123263.AUKY01000046_gene483	Glycosyl hydrolases family 25	NA
UHGV-1416517_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1416517_3	COG	COG1388	LysM repeat	NA
UHGV-1416517_3	Structural annotation	PF01183, PF08460, PF00877, NF040675, COG3757	NA	NA
UHGV-1416517_4	PHROG	phrog_199	holin	lysis
UHGV-1416517_4	UniRef90	UniRef90_UPI001D132DB5	phage holin family protein	NA
UHGV-1416517_4	eggNOG-mapper	552396.HMPREF0863_00264	Bacteriophage holin family	NA
UHGV-1416517_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1416517_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1416517_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1416517_5	PHROG	phrog_134	NA	unknown function
UHGV-1416517_5	UniRef90	UniRef90_A0A373VIX2	XkdX family protein	NA
UHGV-1416517_5	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1416517_5	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1416517_5	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1416517_5	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1416517_6	PHROG	phrog_24451	NA	unknown function
UHGV-1416517_6	eggNOG-mapper	908340.HMPREF9406_2565	NA	NA
UHGV-1416517_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1416517_7	Structural annotation	PF03425, NF033675	NA	NA
UHGV-1416517_9	PHROG	phrog_24103	NA	unknown function
UHGV-1416517_9	eggNOG-mapper	742735.HMPREF9467_00719	NA	NA
UHGV-1416517_11	PHROG	phrog_15594	NA	unknown function
UHGV-1416517_11	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-1416517_11	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1416517_13	PHROG	phrog_8781	endolysin	lysis
UHGV-1416517_13	UniRef90	UniRef90_A0A3A6D9Z4	Peptidase C51 domain-containing protein	NA
UHGV-1416517_13	eggNOG-mapper	1235796.C815_01769	hydrolase, family 25	NA
UHGV-1416517_13	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1416517_13	Structural annotation	PF05382, COG0791	NA	NA
UHGV-1416517_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1416517_14	UniRef90	UniRef90_UPI001D158A25	phage tail protein	NA
UHGV-1416517_14	eggNOG-mapper	1232446.BAIE02000002_gene836	Phage minor structural protein	NA
UHGV-1416517_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1416517_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1416517_14	COG	COG4926	Phage-related protein	NA
UHGV-1416517_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1416517_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1416517_15	UniRef90	UniRef90_A0A3E3E586	Phage tail protein	NA
UHGV-1416517_15	eggNOG-mapper	1232446.BAIE02000002_gene835	phage tail	NA
UHGV-1416517_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-1416517_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1416517_16	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1416517_16	PHROG	phrog_23464	NA	unknown function
UHGV-1416517_16	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-1416517_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1416517_16	Structural annotation	COG5280	NA	NA
UHGV-1416517_19	PHROG	phrog_88	major tail protein	tail
UHGV-1416517_19	UniRef90	UniRef90_A0A3E3ACS6	Phage tail protein	NA
UHGV-1416517_19	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1416517_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1416517_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1416517_20	eggNOG-mapper	1232446.BAIE02000002_gene830	NA	NA
UHGV-1416517_20	Structural annotation	TIGR01725	NA	NA
UHGV-1416517_21	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-1416517_21	Structural annotation	PF05657	NA	NA
UHGV-1416517_22	PHROG	phrog_19734	NA	unknown function
UHGV-1416517_22	UniRef90	UniRef90_UPI001D15BD22	head-tail adaptor protein	NA
UHGV-1416517_22	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-1416517_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1416517_23	PHROG	phrog_2550	NA	unknown function
UHGV-1416517_23	eggNOG-mapper	1232446.BAIE02000002_gene827	NA	NA
UHGV-1416517_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1416517_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-1416517_24	UniRef90	UniRef90_UPI001D139C25	phage major capsid protein	NA
UHGV-1416517_24	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-1416517_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1416517_24	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1416517_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1416517_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1416517_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1416517_25	KOfam	K06904	NA	NA
UHGV-1416517_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1416517_25	UniRef90	UniRef90_UPI001D141099	HK97 family phage prohead protease	NA
UHGV-1416517_25	eggNOG-mapper	1232446.BAIE02000002_gene825	Phage prohead protease, HK97 family	NA
UHGV-1416517_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1416517_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1416517_25	COG	COG3740	Phage head maturation protease	NA
UHGV-1416517_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1416517_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-1416517_26	UniRef90	UniRef90_UPI001D13A36B	phage portal protein	NA
UHGV-1416517_26	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-1416517_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1416517_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1416517_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1416517_26	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1416517_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1416517_27	UniRef90	UniRef90_UPI001D14D10A	terminase large subunit	NA
UHGV-1416517_27	eggNOG-mapper	1232446.BAIE02000002_gene823	Phage Terminase	NA
UHGV-1416517_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1416517_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1416517_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1416517_27	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1416517_28	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1416517_28	UniRef90	UniRef90_UPI001D1546DE	P27 family phage terminase small subunit	NA
UHGV-1416517_28	eggNOG-mapper	1232446.BAIE02000002_gene822	Phage terminase, small subunit	NA
UHGV-1416517_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1416517_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1416517_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1416517_29	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-1416517_29	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-1416517_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1416517_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1416517_31	Structural annotation	TIGR01637	NA	NA
UHGV-1416517_33	PHROG	phrog_1689	nucleotide kinase	other
UHGV-1416517_33	UniRef90	UniRef90_UPI001D150D86	NA	NA
UHGV-1416517_33	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-1416517_33	Pfam	PF11753	NA	DUF3310
UHGV-1416517_33	Structural annotation	PF11753	NA	NA
UHGV-1416517_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1416517_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1416517_34	UniRef90	UniRef90_UPI001D13B790	single-stranded DNA-binding protein	NA
UHGV-1416517_34	eggNOG-mapper	518637.EUBIFOR_00985	Single-stranded DNA-binding protein	NA
UHGV-1416517_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1416517_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1416517_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1416517_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1416517_34	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1416517_36	PHROG	phrog_918	NA	unknown function
UHGV-1416517_36	UniRef90	UniRef90_UPI001D14BC7E	NA	NA
UHGV-1416517_36	eggNOG-mapper	411473.RUMCAL_00361	NA	NA
UHGV-1416517_36	Pfam	PF19791	NA	DUF6275
UHGV-1416517_41	eggNOG-mapper	1235802.C823_04654	NA	NA
UHGV-1416517_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1416517_42	PHROG	phrog_1	integrase	integration and excision
UHGV-1416517_42	UniRef90	UniRef90_UPI001D156F0D	tyrosine-type recombinase/integrase	NA
UHGV-1416517_42	eggNOG-mapper	908340.HMPREF9406_2589	Belongs to the 'phage' integrase family	NA
UHGV-1416517_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1416517_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1416517_42	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-1416517_44	PHROG	phrog_8470	NA	unknown function
UHGV-1416517_44	UniRef90	UniRef90_UPI001D1558B6	PcfJ domain-containing protein	NA
UHGV-1416517_44	eggNOG-mapper	1232449.BAHV02000018_gene1540	PcfJ-like protein	NA
UHGV-1416517_44	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1416517_44	Structural annotation	PF14284, NF008072	NA	NA
UHGV-1416517_45	PHROG	phrog_7445	NA	unknown function
UHGV-1416517_45	UniRef90	UniRef90_UPI001D142670	PcfK-like family protein	NA
UHGV-1416517_45	eggNOG-mapper	1122931.AUAE01000005_gene3272	PcfK-like protein	NA
UHGV-1416517_45	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-1416517_45	Structural annotation	PF14058	NA	NA
UHGV-1416517_46	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1416517_46	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-1416517_46	UniRef90	UniRef90_UPI001D13CF1D	DNA polymerase III subunit beta	NA
UHGV-1416517_46	eggNOG-mapper	1232449.BAHV02000002_gene41	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1416517_46	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-1416517_46	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-1416517_46	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-1416517_46	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-1416517_46	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1416517_46	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1416517_47	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-1416517_47	UniRef90	UniRef90_UPI001D14AAA4	NA	NA
UHGV-1416517_48	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1416517_48	UniRef90	UniRef90_UPI001D14D4CB	conserved phage C-terminal domain-containing protein	NA
UHGV-1416517_48	eggNOG-mapper	1120998.AUFC01000013_gene2941	NA	NA
UHGV-1416517_48	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1416517_48	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1416517_48	Structural annotation	PF09524, PF07106, MF_01177, TIGR02220, TIGR01610, COG0640	NA	NA
UHGV-1416517_55	UniRef90	UniRef90_UPI001D13D714	helix-turn-helix domain-containing protein	NA
UHGV-1416517_55	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-1416517_55	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-1416517_56	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1416517_56	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1416517_56	UniRef90	UniRef90_UPI001D1525DA	helix-turn-helix domain-containing protein	NA
UHGV-1416517_56	eggNOG-mapper	658655.HMPREF0988_02594	Helix-turn-helix	NA
UHGV-1416517_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1416517_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1416517_56	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-1416517_57	PHROG	phrog_30113	NA	unknown function
UHGV-1416517_57	UniRef90	UniRef90_A0A356K491	4Fe-4S ferredoxin-type domain-containing protein	NA
UHGV-1416517_57	eggNOG-mapper	1302863.I872_10475	NA	NA
UHGV-1416517_57	Pfam	PF12686	NA	DUF3800
UHGV-1416517_57	Structural annotation	PF01351, MF_00052_A, TIGR00729, COG1039	NA	NA
UHGV-1416517_58	UniRef90	UniRef90_UPI001D146AF0	PH domain-containing protein	NA
UHGV-1416517_58	Pfam	PF14470	Bacterial PH domain	bPH_3