UHGV-1416579

Genome information

Genome length 34,800 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9531

Prediction confidence Confident

Genome information
Genome ID	UHGV-1416579
vOTU ID	vOTU-009802
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0237478
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9531
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.95
Jumbo phage	No

Genome content
Genome length	34,800 bps
GC content	47.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.84%
Average CDS length	658.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1416579_1	UniRef90	UniRef90_E9SBC1	Conserved domain protein	NA
UHGV-1416579_1	eggNOG-mapper	411474.COPEUT_02431	cytochrome o ubiquinol oxidase protein CyoD K02300	NA
UHGV-1416579_2	Structural annotation	PF19481, PF01978, MF_01909, NF040939, COG5625	NA	NA
UHGV-1416579_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1416579_4	PHROG	phrog_95	integrase	integration and excision
UHGV-1416579_4	UniRef90	UniRef90_A0A1C6GEY5	Resolvase, N terminal domain	NA
UHGV-1416579_4	eggNOG-mapper	537013.CLOSTMETH_02040	NA	NA
UHGV-1416579_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1416579_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-1416579_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1416579_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1416579_4	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1416579_5	UniRef90	UniRef90_R6SEH3	TPR Domain containing protein	NA
UHGV-1416579_5	Structural annotation	PF18768, MF_00994, NF008756, COG5010	NA	NA
UHGV-1416579_6	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1416579_6	UniRef90	UniRef90_A0A1C6GF39	Host cell surface-exposed lipoprotein	NA
UHGV-1416579_6	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-1416579_6	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1416579_6	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1416579_7	PHROG	phrog_87	metallo-protease	other
UHGV-1416579_7	UniRef90	UniRef90_A0A7X9BSM0	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1416579_7	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-1416579_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1416579_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1416579_8	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-1416579_8	UniRef90	UniRef90_A0A1C6GF80	Predicted transcriptional regulator	NA
UHGV-1416579_8	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-1416579_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1416579_8	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-1416579_9	UniRef90	UniRef90_UPI00164C9F56	helix-turn-helix domain-containing protein	NA
UHGV-1416579_9	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-1416579_9	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-1416579_11	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-1416579_13	UniRef90	UniRef90_A0A352A2H2	DNA-binding protein	NA
UHGV-1416579_13	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-1416579_14	PHROG	phrog_5079	NA	unknown function
UHGV-1416579_14	eggNOG-mapper	1122143.AUEG01000001_gene582	NA	NA
UHGV-1416579_16	Structural annotation	MF_00273	NA	NA
UHGV-1416579_18	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1416579_20	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1416579_20	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-1416579_20	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-1416579_20	Structural annotation	PF03837, TIGR01913	NA	NA
UHGV-1416579_21	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1416579_21	PHROG	phrog_1499	NA	unknown function
UHGV-1416579_21	UniRef90	UniRef90_A0A1C6FNE5	Chromosome segregation protein	NA
UHGV-1416579_21	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-1416579_21	Pfam	PF13476	AAA domain	AAA_23
UHGV-1416579_21	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1416579_21	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1416579_22	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1416579_22	UniRef90	UniRef90_UPI00041F978E	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-1416579_22	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-1416579_22	Pfam	PF12684	NA	DUF3799
UHGV-1416579_22	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1416579_22	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-1416579_23	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1416579_23	UniRef90	UniRef90_A0A1C6FNL5	ERCC4 domain-containing protein	NA
UHGV-1416579_23	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-1416579_23	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1416579_23	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1416579_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1416579_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1416579_24	UniRef90	UniRef90_A0A1C6FN64	Single-stranded DNA-binding protein	NA
UHGV-1416579_24	eggNOG-mapper	1384066.JAGT01000001_gene1404	Single-stranded DNA-binding protein	NA
UHGV-1416579_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1416579_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1416579_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1416579_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1416579_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1416579_25	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1416579_25	UniRef90	UniRef90_A0A1C6GFP7	NA	NA
UHGV-1416579_25	eggNOG-mapper	290402.Cbei_1623	NA	NA
UHGV-1416579_25	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1416579_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1416579_25	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-1416579_28	Structural annotation	TIGR01636	NA	NA
UHGV-1416579_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1416579_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1416579_30	UniRef90	UniRef90_A0A1C6GFY7	Phage terminase, large subunit, PBSX family	NA
UHGV-1416579_30	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-1416579_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1416579_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1416579_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1416579_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1416579_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1416579_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-1416579_31	UniRef90	UniRef90_A0A1C6GG74	Phage portal protein, putative, A118 family	NA
UHGV-1416579_31	eggNOG-mapper	642492.Clole_0815	NA	NA
UHGV-1416579_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1416579_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1416579_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1416579_32	UniRef90	UniRef90_A0A1C6GGW2	Phage minor capsid protein 2	NA
UHGV-1416579_32	eggNOG-mapper	1151292.QEW_4539	NA	NA
UHGV-1416579_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1416579_32	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1416579_32	COG	COG2369	NA	NA
UHGV-1416579_32	Structural annotation	PF06152, PF15542	NA	NA
UHGV-1416579_33	Structural annotation	PF11607, MF_01077, NF037951, COG4568	NA	NA
UHGV-1416579_34	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1416579_34	UniRef90	UniRef90_A0A1C6GGD5	Phage minor structural protein GP20	NA
UHGV-1416579_34	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-1416579_34	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1416579_34	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1416579_35	PHROG	phrog_422	major head protein	head and packaging
UHGV-1416579_35	UniRef90	UniRef90_A0A345MKD0	Main capsid protein	NA
UHGV-1416579_35	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-1416579_35	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1416579_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1416579_36	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1416579_37	Pfam	PF20536	NA	DUF6751
UHGV-1416579_37	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1416579_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1416579_38	UniRef90	UniRef90_A0A1G4WU41	Minor capsid protein	NA
UHGV-1416579_38	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-1416579_38	Structural annotation	PF11114	NA	NA
UHGV-1416579_39	PHROG	phrog_3266	tail completion	connector
UHGV-1416579_40	PHROG	phrog_3099	NA	unknown function
UHGV-1416579_40	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-1416579_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1416579_42	PHROG	phrog_706	NA	unknown function
UHGV-1416579_42	UniRef90	UniRef90_A0A1C6GGT7	Bacteriophage Gp15 protein	NA
UHGV-1416579_42	eggNOG-mapper	1300150.EMQU_2490	Bacteriophage Gp15 protein	NA
UHGV-1416579_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1416579_42	Structural annotation	PF06854	NA	NA
UHGV-1416579_43	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1416579_43	UniRef90	UniRef90_A0A1C6GH83	Phage-related minor tail protein	NA
UHGV-1416579_43	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-1416579_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1416579_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1416579_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1416579_43	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1416579_44	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1416579_45	Structural annotation	PF05954, NF033848, COG4379	NA	NA
UHGV-1416579_47	Structural annotation	PF21621	NA	NA
UHGV-1416579_49	PHROG	phrog_199	holin	lysis
UHGV-1416579_49	UniRef90	UniRef90_A0A1C6CUD9	Phage-related holin (Lysis protein)	NA
UHGV-1416579_49	eggNOG-mapper	1120746.CCNL01000017_gene2574	toxin secretion phage lysis holin	NA
UHGV-1416579_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1416579_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1416579_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1416579_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1416579_50	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1416579_50	PHROG	phrog_670	endolysin	lysis
UHGV-1416579_50	UniRef90	UniRef90_R7KX59	Muramidase (Flagellum-specific)	NA
UHGV-1416579_50	eggNOG-mapper	1163671.JAGI01000002_gene1233	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1416579_50	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1416579_50	Pfam	PF05036	SPOR domain	SPOR
UHGV-1416579_50	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1416579_50	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA