UHGV-1416657

Genome information

vOTU vOTU-019900

Genome length 45,032 bps

CDS count 76

Completeness 78.96% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-1416657
vOTU ID	vOTU-019900
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0293432
BioSample	SAMEA2145815
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.81
Jumbo phage	No

Genome content
Genome length	45,032 bps
GC content	36.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	88.70%
Average CDS length	527.01 bps
tRNA count	2
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1416657_1	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-1416657_1	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-1416657_1	Structural annotation	PF16677	NA	NA
UHGV-1416657_2	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1416657_2	UniRef90	UniRef90_A0A8D9PGJ8	MazG domain-containing protein	NA
UHGV-1416657_2	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1416657_2	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1416657_2	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1416657_2	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-1416657_3	PHROG	phrog_236	nucleotide kinase	other
UHGV-1416657_3	UniRef90	UniRef90_A0A8D9PG35	Nucelotide kinase	NA
UHGV-1416657_3	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-1416657_3	Pfam	PF11753	NA	DUF3310
UHGV-1416657_3	Structural annotation	PF11753	NA	NA
UHGV-1416657_4	PHROG	phrog_6969	NA	unknown function
UHGV-1416657_4	UniRef90	UniRef90_A0A843HT15	Winged helix DNA-binding protein	NA
UHGV-1416657_4	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1416657_6	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-1416657_6	Structural annotation	PF05225, COG2886	NA	NA
UHGV-1416657_8	PHROG	phrog_6730	NA	unknown function
UHGV-1416657_8	eggNOG-mapper	1136534.J9PTY8_9CAUD	NA	NA
UHGV-1416657_8	Structural annotation	PF00684, MF_04158	NA	NA
UHGV-1416657_12	Structural annotation	PF15591, MF_01549, NF000331, COG5475	NA	NA
UHGV-1416657_13	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-1416657_13	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-1416657_14	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1416657_14	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-1416657_14	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-1416657_14	COG	COG5410	NA	NA
UHGV-1416657_14	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1416657_15	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1416657_15	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-1416657_15	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-1416657_15	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1416657_15	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-1416657_16	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-1416657_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-1416657_17	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-1416657_17	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1416657_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1416657_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1416657_19	PHROG	phrog_544	major head protein	head and packaging
UHGV-1416657_19	UniRef90	UniRef90_A0A380K697	MHP	NA
UHGV-1416657_19	eggNOG-mapper	1211814.CAPG01000027_gene1311	NA	NA
UHGV-1416657_20	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1416657_20	UniRef90	UniRef90_Q9AYW5	Group I intron	NA
UHGV-1416657_20	eggNOG-mapper	35241.Q9AYW5_BPTU2	NA	NA
UHGV-1416657_20	Structural annotation	PF18741, MF_04160, TIGR00632, COG3727	NA	NA
UHGV-1416657_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-1416657_21	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-1416657_21	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-1416657_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1416657_21	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1416657_22	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-1416657_22	Structural annotation	PF21169	NA	NA
UHGV-1416657_23	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1416657_24	PHROG	phrog_1863	NA	unknown function
UHGV-1416657_24	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-1416657_25	PHROG	phrog_1129	holin	lysis
UHGV-1416657_25	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-1416657_25	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-1416657_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1416657_25	Structural annotation	PF06946	NA	NA
UHGV-1416657_26	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1416657_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1416657_28	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-1416657_28	AcrCatalog	cluster_24841	NA	NA
UHGV-1416657_29	Structural annotation	PF05657	NA	NA
UHGV-1416657_30	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-1416657_30	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1416657_32	PHROG	phrog_36112	NA	unknown function
UHGV-1416657_32	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-1416657_32	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-1416657_32	Structural annotation	PF16478	NA	NA
UHGV-1416657_34	PHROG	phrog_28918	NA	unknown function
UHGV-1416657_34	UniRef90	UniRef90_A0A8D9PGP0	Minor tail protein	NA
UHGV-1416657_34	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-1416657_34	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1416657_34	Structural annotation	PF20155	NA	NA
UHGV-1416657_35	PHROG	phrog_28918	NA	unknown function
UHGV-1416657_35	eggNOG-mapper	483218.BACPEC_01146	domain protein	NA
UHGV-1416657_35	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1416657_36	PHROG	phrog_1194	NA	unknown function
UHGV-1416657_36	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-1416657_36	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1416657_37	PHROG	phrog_1401	NA	unknown function
UHGV-1416657_37	Structural annotation	PF07761	NA	NA
UHGV-1416657_38	PHROG	phrog_6616	tail protein	tail
UHGV-1416657_38	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-1416657_38	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-1416657_38	COG	COG4926	Phage-related protein	NA
UHGV-1416657_38	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-1416657_39	PHROG	phrog_2566	NA	unknown function
UHGV-1416657_40	KOfam	K07273	acm; lysozyme	NA
UHGV-1416657_40	PHROG	phrog_291	endolysin	lysis
UHGV-1416657_40	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-1416657_40	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-1416657_40	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1416657_40	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1416657_40	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-1416657_41	Structural annotation	PF03843, MF_01959, TIGR00752, COG3065	NA	NA
UHGV-1416657_42	Structural annotation	PF13108	NA	NA
UHGV-1416657_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1416657_45	UniRef90	UniRef90_UPI001D081DA8	helix-turn-helix domain-containing protein	NA
UHGV-1416657_45	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-1416657_45	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1416657_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1416657_45	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1416657_46	UniRef90	UniRef90_UPI000E4D6E81	helix-turn-helix domain-containing protein	NA
UHGV-1416657_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1416657_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1416657_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1416657_47	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-1416657_47	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-1416657_47	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-1416657_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1416657_47	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1416657_47	COG	COG3617	Prophage antirepressor	NA
UHGV-1416657_47	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-1416657_48	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1416657_48	PHROG	phrog_14642	endolysin	lysis
UHGV-1416657_48	UniRef90	UniRef90_A0A8D9PGU7	Cell Wall Hydrolase	NA
UHGV-1416657_48	eggNOG-mapper	742733.HMPREF9469_00034	Cell Wall Hydrolase	NA
UHGV-1416657_48	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-1416657_48	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-1416657_48	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-1416657_49	UniRef90	UniRef90_A0A8D9UIQ5	Sporulation initiation factor	NA
UHGV-1416657_49	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1416657_49	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-1416657_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1416657_50	PHROG	phrog_26861	NA	unknown function
UHGV-1416657_50	UniRef90	UniRef90_A0A8D9PGK1	Single strand binding protein	NA
UHGV-1416657_50	eggNOG-mapper	515620.EUBELI_01590	NA	NA
UHGV-1416657_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1416657_50	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-1416657_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1416657_50	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1416657_52	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1416657_52	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1416657_52	UniRef90	UniRef90_A0A8D9PGW5	Chromosome partition protein	NA
UHGV-1416657_52	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-1416657_52	Pfam	PF13476	AAA domain	AAA_23
UHGV-1416657_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1416657_52	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1416657_53	PHROG	phrog_2164	NA	unknown function
UHGV-1416657_53	eggNOG-mapper	1174684.EBMC1_14695	NA	NA
UHGV-1416657_54	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-1416657_54	PHROG	phrog_4433	NA	unknown function
UHGV-1416657_54	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-1416657_54	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1416657_54	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1416657_54	Structural annotation	NF007410	NA	NA
UHGV-1416657_55	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1416657_55	UniRef90	UniRef90_UPI001BC46C39	Recombinase RecT	NA
UHGV-1416657_55	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-1416657_55	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1416657_56	PHROG	phrog_25456	NA	unknown function
UHGV-1416657_57	PHROG	phrog_9822	NA	unknown function
UHGV-1416657_58	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1416657_58	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-1416657_58	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1416657_58	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1416657_58	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1416657_58	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1416657_61	PHROG	phrog_2470	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-1416657_61	UniRef90	UniRef90_A0A414ZRJ4	NA	NA
UHGV-1416657_61	eggNOG-mapper	649747.HMPREF0083_06229	NA	NA
UHGV-1416657_61	Pfam	PF11750	NA	DUF3307
UHGV-1416657_61	Structural annotation	PF11750	NA	NA
UHGV-1416657_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1416657_64	PHROG	phrog_98	NA	unknown function
UHGV-1416657_64	UniRef90	UniRef90_A0A3D5WQK7	YopX domain-containing protein	NA
UHGV-1416657_64	eggNOG-mapper	1095737.HMPREF1110_1215	YopX protein	NA
UHGV-1416657_64	Pfam	PF09643	YopX protein	YopX
UHGV-1416657_64	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1416657_64	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1416657_65	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1416657_65	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1416657_65	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-1416657_65	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-1416657_65	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1416657_65	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1416657_65	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1416657_65	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1416657_65	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1416657_66	PHROG	phrog_10714	NA	unknown function
UHGV-1416657_69	PHROG	phrog_19106	NA	unknown function
UHGV-1416657_69	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-1416657_69	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1416657_69	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1416657_69	Structural annotation	TIGR01453	NA	NA
UHGV-1416657_73	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1416657_73	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1416657_73	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-1416657_73	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-1416657_73	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1416657_73	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1416657_73	COG	COG0863	DNA modification methylase	NA
UHGV-1416657_73	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1416657_74	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1416657_74	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-1416657_74	AcrCatalog	cluster_47493	NA	NA
UHGV-1416657_74	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-1416657_76	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-1416657_76	UniRef90	UniRef90_A0A353JBC1	DnaB_2 domain-containing protein (Fragment)	NA
UHGV-1416657_76	eggNOG-mapper	1231377.C426_1702	dnaD_dom DnaD domain protein	NA
UHGV-1416657_76	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1416657_76	Structural annotation	PF09681, MF_01819, TIGR01714, COG1846	NA	NA