UHGV-1417103

Genome information

Genome length 45,122 bps

CDS count 49

Completeness 96.97% (high-quality)

geNomad score 0.9761

Prediction confidence Confident

Genome information
Genome ID	UHGV-1417103
vOTU ID	vOTU-011881
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0293808
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.97% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9761
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.62
Jumbo phage	No

Genome content
Genome length	45,122 bps
GC content	50.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	95.02%
Average CDS length	877.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1417103_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1417103_1	PHROG	phrog_29443	NA	unknown function
UHGV-1417103_1	UniRef90	UniRef90_UPI001650A245	DNA cytosine methyltransferase	NA
UHGV-1417103_1	eggNOG-mapper	1286093.C266_13879	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1417103_1	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-1417103_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1417103_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1417103_4	PHROG	phrog_1029	NA	unknown function
UHGV-1417103_4	eggNOG-mapper	1519439.JPJG01000059_gene1911	NA	NA
UHGV-1417103_4	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1417103_5	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1417103_5	UniRef90	UniRef90_UPI0011581F2E	replication terminator protein	NA
UHGV-1417103_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1417103_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1417103_6	UniRef90	UniRef90_A0A2V2ET02	Single-stranded DNA-binding protein	NA
UHGV-1417103_6	eggNOG-mapper	997346.HMPREF9374_2491	Single-strand binding protein family	NA
UHGV-1417103_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1417103_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1417103_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1417103_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1417103_6	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1417103_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1417103_7	PHROG	phrog_26861	NA	unknown function
UHGV-1417103_7	UniRef90	UniRef90_A0A356F3R1	Single-stranded DNA-binding protein	NA
UHGV-1417103_7	eggNOG-mapper	1304880.JAGB01000001_gene702	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1417103_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1417103_7	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-1417103_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1417103_7	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1417103_8	eggNOG-mapper	742817.HMPREF9449_01803	NA	NA
UHGV-1417103_8	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-1417103_9	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1417103_9	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1417103_9	UniRef90	UniRef90_A0A7G9GLS4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1417103_9	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-1417103_9	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1417103_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1417103_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1417103_10	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1417103_10	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1417103_10	UniRef90	UniRef90_UPI000F53F699	recombinase RecT	NA
UHGV-1417103_10	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-1417103_10	Pfam	PF03837	RecT family	RecT
UHGV-1417103_10	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1417103_10	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1417103_10	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1417103_11	PHROG	phrog_674	NA	unknown function
UHGV-1417103_11	UniRef90	UniRef90_A0A4P9C8L7	NA	NA
UHGV-1417103_11	eggNOG-mapper	658655.HMPREF0988_02587	NA	NA
UHGV-1417103_11	Pfam	PF07083	NA	DUF1351
UHGV-1417103_11	Structural annotation	PF07083	NA	NA
UHGV-1417103_12	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1417103_12	UniRef90	UniRef90_A0A1W1YQ31	Putative phage-type endonuclease	NA
UHGV-1417103_12	eggNOG-mapper	1121441.AUCX01000014_gene536	YqaJ-like viral recombinase domain	NA
UHGV-1417103_12	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1417103_12	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1417103_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1417103_12	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1417103_17	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1417103_18	KOfam	K07497	K07497; putative transposase	NA
UHGV-1417103_18	PHROG	phrog_8463	transposase	integration and excision
UHGV-1417103_18	UniRef90	UniRef90_A0A1Q6RLB1	Integrase catalytic domain-containing protein	NA
UHGV-1417103_18	eggNOG-mapper	1123307.KB904367_gene1244	Transposase and inactivated derivatives	NA
UHGV-1417103_18	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-1417103_18	Pfam	PF00665	Integrase core domain	rve
UHGV-1417103_18	Pfam	PF13683	Integrase core domain	rve_3
UHGV-1417103_18	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1417103_18	Structural annotation	PF00665, PF13518, NF033577, COG2801	NA	NA
UHGV-1417103_25	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1417103_25	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1417103_25	UniRef90	UniRef90_A0A1Q6RLC1	Reverse transcriptase domain-containing protein	NA
UHGV-1417103_25	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-1417103_25	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1417103_25	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1417103_25	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1417103_26	PHROG	phrog_5302	tail protein	tail
UHGV-1417103_26	UniRef90	UniRef90_A0A832QA81	Prepilin-type N-terminal cleavage/methylation domain-containing protein	NA
UHGV-1417103_26	eggNOG-mapper	1151292.QEW_0671	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1417103_26	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1417103_26	Structural annotation	COG1262	NA	NA
UHGV-1417103_28	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-1417103_28	Structural annotation	PF11134, TIGR04312, COG3823	NA	NA
UHGV-1417103_29	Structural annotation	PF20387, NF038128, COG5156	NA	NA
UHGV-1417103_30	PHROG	phrog_371	major head protein	head and packaging
UHGV-1417103_30	UniRef90	UniRef90_A0A8F2JBL2	Mu-like prophage major head subunit gpT family protein	NA
UHGV-1417103_30	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-1417103_30	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-1417103_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1417103_31	PHROG	phrog_24113	NA	unknown function
UHGV-1417103_31	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-1417103_31	Structural annotation	PF11133, COG5471	NA	NA
UHGV-1417103_36	PHROG	phrog_22978	NA	unknown function
UHGV-1417103_36	eggNOG-mapper	1226322.HMPREF1545_00787	NA	NA
UHGV-1417103_36	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-1417103_36	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-1417103_36	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1417103_37	eggNOG-mapper	1961.JOAK01000002_gene907	TIGRFAM YD repeat protein	NA
UHGV-1417103_37	COG	COG3209	NA	NA
UHGV-1417103_38	PHROG	phrog_156	portal protein	head and packaging
UHGV-1417103_38	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-1417103_38	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-1417103_39	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-1417103_39	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1417103_39	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-1417103_39	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-1417103_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-1417103_39	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1417103_40	PHROG	phrog_3064	terminase	head and packaging
UHGV-1417103_40	UniRef90	UniRef90_A0A6M3K976	Putative terminase small subunit	NA
UHGV-1417103_40	eggNOG-mapper	945083.E7EKS4_9CAUD	NA	NA
UHGV-1417103_42	UniRef90	UniRef90_A0A217EQZ2	Metal-dependent hydrolase	NA
UHGV-1417103_44	PHROG	phrog_918	NA	unknown function
UHGV-1417103_44	UniRef90	UniRef90_UPI001D020797	NA	NA
UHGV-1417103_44	eggNOG-mapper	1499683.CCFF01000014_gene3910	NA	NA
UHGV-1417103_44	Pfam	PF19791	NA	DUF6275
UHGV-1417103_44	Structural annotation	PF19791	NA	NA
UHGV-1417103_48	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1417103_48	UniRef90	UniRef90_A0A373PYN5	NAD(P)-dependent oxidoreductase	NA
UHGV-1417103_48	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-1417103_48	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1417103_48	Structural annotation	PF03848, MF_00341, NF012219, COG1255	NA	NA
UHGV-1417103_49	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1417103_49	PHROG	phrog_13621	NA	unknown function
UHGV-1417103_49	UniRef90	UniRef90_UPI001E2B88CF	DNA cytosine methyltransferase	NA
UHGV-1417103_49	eggNOG-mapper	1519439.JPJG01000060_gene1872	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1417103_49	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1417103_49	COG	COG0270	DNA-cytosine methylase	NA